RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB8827" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB8827 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25666205 25666205 PRJEB8827g_S_NODE_3082_length_196_cov_2.360248_g3061_i0 PRJEB8827 3082 196 2.360248 4.62608608 Plasmodium gaboni 647221 SAR_Eukaryotes SAR_Eukaryotes 76.8 1.01e-9   NTclustered gi|1084825123|ref|XM_018785141.1| 647221 g3061 i0 95.745 20.984693877551 47 2 24 0 22 68 4648 4694 Plasmodium gaboni hypothetical protein partial mRNA blastn 4113 76.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gaboni
25938746 25938746 PRJEB8827h_S_NODE_948_length_298_cov_3.642586_g929_i0 PRJEB8827 948 298 3.642586 10.85490628 Plasmodium chabaudi chabaudi 31271 SAR_Eukaryotes SAR_Eukaryotes 91.6 5.87e-14   NTclustered gi|1027949921|ref|XR_001678647.1| 31271 g929 i0 78.523 1.3255033557047 149 24 49 6 146 291 1465 1322 Plasmodium chabaudi chabaudi 28S ribosomal RNA (PCHAS_0521461), rRNA blastn 395 91.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
26482686 26482686 PRJEB8827f_S_NODE_3800_length_230_cov_15.912821_g3780_i0 PRJEB8827 3800 230 15.912821 36.5994883 Platyproteum noduliferae 2903131 SAR_Eukaryotes SAR_Eukaryotes 73.1 1.58e-8   NTclustered gi|2250018225|dbj|LC663666.1| 2903131 g3780 i0 97.619 0.182608695652174 42 1 18 0 1 42 3299 3340 Platyproteum noduliferae P1 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 42 73.1 1 Eukaryota Sar   Apicomplexa Conoidasida Archigregarinorida Selenidiidae Platyproteum Platyproteum noduliferae
26570049 26570049 PRJEB8827h_S_NODE_5656_length_200_cov_25.569697_g5637_i0 PRJEB8827 5656 200 25.569697 51.139394 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 207 3.5e-49   NTclustered gi|8927036|gb|AF076872.1|AF076872 482539 g5637 i0 91.892 74.155 148 12 74 0 53 200 432 579 Isospora felis large subunit ribosomal RNA gene, partial sequence blastn 14831 207 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora felis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;