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contig_metadata

378 rows where analysis = "blastn", bioproject = "PRJEB8827" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 378 ✖

bioproject 1

  • PRJEB8827 · 378 ✖

analysis 1

  • blastn · 378 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
144888 144888 PRJEB8827_P_NODE_1861_length_185_cov_6.096154_g1839_i0 PRJEB8827 1861 185 6.096154 11.2778849 Lentivirus humimdef1 3418650 Viruses Viruses 200 5.329999999999998e-47   NTclustered gi|1328390092|gb|MG197093.1| 11676 g1839 i0 88.69 91.2810810810811 168 13 91 5 18 185 6952 6791 HIV-1 isolate 505_1730a.WG05 from USA nonfunctional gag protein (gag) gene, complete sequence; pol protein (pol) gene, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and nef protein (nef) gene, complete cds blastn 16887 200 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
5247647 5247647 PRJEB8827_P_NODE_145_length_384_cov_4.630986_g125_i0 PRJEB8827 145 384 4.630986 17.78298624 Lentivirus humimdef1 3418650 Viruses Viruses 558 1.77e-154   NTclustered gi|30794654|gb|AY247222.1| 11676 g125 i0 97.546 84.4270833333333 326 8 85 0 1 326 70 395 HIV-1 isolate 81NY1 from USA envelope glycoprotein (env) gene, complete cds blastn 32420 558 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
11623464 11623464 PRJEB8827_P_NODE_190_length_359_cov_2.193939_g168_i0 PRJEB8827 190 359 2.193939 7.87624101 Lentivirus humimdef1 3418650 Viruses Viruses 510 4.67e-140   NTclustered gi|487384|gb|U08973.1|HIV1U08973 11676 g168 i0 92.877 98.4373259052925 351 25 98 0 7 357 605 255 Human immunodeficiency virus type 1 clone RJIO1-10 envelope glycoprotein (env) gene, partial cds blastn 35339 510 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
12898535 12898535 PRJEB8827_P_NODE_2111_length_178_cov_1.422819_g2089_i0 PRJEB8827 2111 178 1.422819 2.53261782 Lentivirus humimdef1 3418650 Viruses Viruses 279 6.35e-71   NTclustered gi|334302562|gb|JF494950.1| 11676 g2089 i0 94.944 100.005617977528 178 9 100 0 1 178 167 344 HIV-1 isolate 94-645 from Argentina vif protein (vif) gene, complete cds blastn 17801 279 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
12898541 12898541 PRJEB8827_P_NODE_651_length_250_cov_1.497738_g629_i0 PRJEB8827 651 250 1.497738 3.744345 Lentivirus humimdef1 3418650 Viruses Viruses 351 1.99e-92   NTclustered gi|6466838|gb|AF184155.1| 11676 g629 i0 92 99.276 250 20 100 0 1 250 4728 4479 HIV-1 G829 from Ghana complete genome blastn 24819 351 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
15447602 15447602 PRJEB8827_P_NODE_793_length_237_cov_1.283654_g771_i0 PRJEB8827 793 237 1.283654 3.04225998 Lentivirus humimdef1 3418650 Viruses Viruses 276 1.16e-69   NTclustered gi|1351110346|gb|MG756491.1| 11676 g771 i0 87.866 86.8059071729958 239 24 99 4 1 235 325 88 HIV-1 isolate B_CH-2015_MP035_BLOOD_R4_C97_S0015_C0064 nonfunctional envelope glycoprotein (env) gene, partial sequence blastn 20573 276 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
21821713 21821713 PRJEB8827_P_NODE_1498_length_198_cov_1.142012_g1476_i0 PRJEB8827 1498 198 1.142012 2.26118376 Lentivirus humimdef1 3418650 Viruses Viruses 289 1.1999999999999999e-73   NTclustered gi|408721024|gb|JQ269217.1| 11676 g1476 i0 92.929 99.9949494949495 198 14 100 0 1 198 540 737 HIV-1 isolate 10SYD4-9178 from South Korea vif protein (vif) and vpr protein (vpr) genes, complete cds; and tat protein (tat) gene, partial cds blastn 19799 289 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
24370762 24370762 PRJEB8827_P_NODE_3520_length_157_cov_1.210938_g3498_i0 PRJEB8827 3520 157 1.210938 1.90117266 Lentivirus humimdef1 3418650 Viruses Viruses 248 1.54e-61   NTclustered gi|294722519|gb|GQ433069.1| 11676 g3498 i0 95.484 98.8662420382166 155 7 99 0 3 157 515 361 HIV-1 clone CMNYU124(9)34 from Cameroon pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; and tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, partial cds blastn 15522 248 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530199 25530199 PRJEB8827g_S_NODE_1313_length_267_cov_1.551724_g1292_i0 PRJEB8827 1313 267 1.551724 4.14310308 Human immunodeficiency virus 1 11676 Viruses Viruses 241 4.86e-59   NTclustered gi|190351833|gb|EU744003.1| 11676 g1292 i0 83.275 87.5056179775281 287 23 100 16 1 267 644 363 HIV-1 isolate H1.46.5B3 from Netherlands envelope glycoprotein (env) gene, complete cds blastn 23364 241 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530205 25530205 PRJEB8827g_S_NODE_1529_length_251_cov_11.097222_g1508_i0 PRJEB8827 1529 251 11.097222 27.85402722 Human immunodeficiency virus 1 11676 Viruses Viruses 392 1.18e-104   NTclustered gi|34765781|gb|AY371716.1| 11676 g1508 i0 94.821 99.9043824701195 251 13 100 0 1 251 141 391 HIV-1 isolate 00CMNYU4115 from Cameroon gag protein (gag) gene, partial cds blastn 25076 392 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530211 25530211 PRJEB8827g_S_NODE_169_length_576_cov_13.913124_g154_i0 PRJEB8827 169 576 13.913124 80.13959424 Human immunodeficiency virus 1 11676 Viruses Viruses 575 2.7299999999999995e-159   NTclustered gi|11124940|emb|AJ404110.1| 11676 g154 i0 85.484 99.8454861111111 558 73 96 5 23 576 1 554 Human immunodeficiency virus type 1 proviral partial env gene for envelope glycoprotein gp120, strain A_97DC.KS7 blastn 57511 575 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530214 25530214 PRJEB8827g_S_NODE_1777_length_236_cov_4.641791_g1756_i0 PRJEB8827 1777 236 4.6417909999999996 10.95462676 Human immunodeficiency virus 1 11676 Viruses Viruses 364 2.39e-96   NTclustered gi|1219409794|gb|KY797500.1| 11676 g1756 i0 94.468 99.3898305084746 235 13 99 0 1 235 235 1 HIV-1 isolate EPM_3691 from Brazil vif protein (vif), pol protein (pol), and vpr protein (vpr) genes, partial cds blastn 23456 364 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530216 25530216 PRJEB8827g_S_NODE_1793_length_235_cov_3.590000_g1772_i0 PRJEB8827 1793 235 3.59 8.4365 Human immunodeficiency virus 1 11676 Viruses Viruses 363 8.569999999999998e-96   NTclustered gi|723452984|gb|KM354344.1| 11676 g1772 i0 94.468 100 235 13 100 0 1 235 979 745 HIV-1 isolate 9024_070808_plasma_25 from USA envelope glycoprotein (env) gene, complete cds blastn 23500 363 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530217 25530217 PRJEB8827g_S_NODE_1809_length_234_cov_11.648241_g1788_i0 PRJEB8827 1809 234 11.648241 27.25688394 Human immunodeficiency virus 1 11676 Viruses Viruses 346 8.580000000000001e-91   NTclustered gi|18463784|gb|AF418847.1| 11676 g1788 i0 93.534 100.179487179487 232 15 99 0 1 232 318 87 HIV-1 isolate 93USPIC1015ea2 from USA envelope glycoprotein gp120 (env) gene, partial cds blastn 23442 346 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530221 25530221 PRJEB8827g_S_NODE_1905_length_229_cov_9.829897_g1884_i0 PRJEB8827 1905 229 9.829897 22.51046413 Human immunodeficiency virus 1 11676 Viruses Viruses 313 8.49e-81   NTclustered gi|164417628|gb|EU184581.1| 11676 g1884 i0 92.991 93.423580786026207 214 15 93 0 1 214 313 100 HIV-1 isolate 976v2_2402 from USA nonfunctional envelope glycoprotein (env) gene, partial sequence blastn 21394 313 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530222 25530222 PRJEB8827g_S_NODE_193_length_541_cov_20.723320_g177_i0 PRJEB8827 193 541 20.72332 112.1131612 Human immunodeficiency virus 1 11676 Viruses Viruses 680 0   NTclustered gi|1655447382|gb|MH746233.1| 11676 g177 i0 89.503 99.2513863216266 543 41 100 8 1 541 1672 1144 HIV-1 isolate S_09_025 from Bulgaria rev protein (rev) and tat protein (tat) genes, partial cds; vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds blastn 53695 680 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530223 25530223 PRJEB8827g_S_NODE_1945_length_227_cov_39.776042_g1924_i0 PRJEB8827 1945 227 39.776042 90.29161534 Human immunodeficiency virus 1 11676 Viruses Viruses 342 1.07e-89   NTclustered gi|920764009|gb|KT283800.1| 11676 g1924 i0 93.86 100.229074889868 228 12 100 2 1 227 1213 1439 HIV-1 isolate P1031_8.07_10A from USA envelope glycoprotein (env) gene, complete cds blastn 22752 342 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530227 25530227 PRJEB8827g_S_NODE_2137_length_219_cov_2.521739_g2116_i0 PRJEB8827 2137 219 2.521739 5.52260841 Human immunodeficiency virus 1 11676 Viruses Viruses 283 6.31e-72   NTclustered gi|2722331931|gb|PP544645.1| 11676 g2116 i0 90 99.8310502283105 220 20 100 2 1 219 1532 1314 HIV-1 isolate H11668.34m.A2 from Netherlands vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds; rev protein (rev) and tat protein (tat) genes, partial cds; and nef protein (nef) gene, complete cds blastn 21863 283 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530232 25530232 PRJEB8827g_S_NODE_233_length_495_cov_3.380435_g216_i0 PRJEB8827 233 495 3.380435 16.73315325 Human immunodeficiency virus 1 11676 Viruses Viruses 710 0   NTclustered gi|386306970|gb|JN014343.1| 11676 g216 i0 92.525 100.39595959596 495 37 100 0 1 495 12 506 HIV-1 isolate ZM53F clone 11 from Zambia gag protein (gag) gene, partial cds blastn 49696 710 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530235 25530235 PRJEB8827g_S_NODE_2425_length_210_cov_3.691429_g2404_i0 PRJEB8827 2425 210 3.691429 7.7520009 Human immunodeficiency virus 1 11676 Viruses Viruses 344 2.7199999999999998e-90   NTclustered gi|2431466170|gb|OP701520.1| 11676 g2404 i0 96.19 100 210 8 100 0 1 210 5113 5322 HIV-1 isolate PRA009_PB_PD1posCTLA4neg_87 from Australia, complete genome blastn 21000 344 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530236 25530236 PRJEB8827g_S_NODE_2449_length_209_cov_14.919540_g2428_i0 PRJEB8827 2449 209 14.91954 31.1818386 Human immunodeficiency virus 1 11676 Viruses Viruses 348 2.09e-91   NTclustered gi|164416981|gb|EU184230.1| 11676 g2428 i0 96.651 99.9808612440191 209 7 100 0 1 209 638 430 HIV-1 isolate 892V1_2618 from USA envelope glycoprotein (env) gene, partial cds blastn 20896 348 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530241 25530241 PRJEB8827g_S_NODE_2713_length_203_cov_12.107143_g2692_i0 PRJEB8827 2713 203 12.107143 24.57750029 Human immunodeficiency virus 1 11676 Viruses Viruses 243 9.78e-60   NTclustered gi|2575864301|gb|OR327233.1| 11676 g2692 i0 88.406 102.990147783251 207 16 100 8 1 203 1100 1302 HIV-1 isolate 93CBG4-18908/14723 from South Korea envelope glycoprotein (env) and nef protein (nef) genes, complete cds blastn 20907 243 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530242 25530242 PRJEB8827g_S_NODE_2801_length_201_cov_4.036145_g2780_i0 PRJEB8827 2801 201 4.036145 8.11265145 Human immunodeficiency virus 1 11676 Viruses Viruses 289 1.2199999999999998e-73   NTclustered gi|1655447035|gb|MK086111.1| 11676 g2780 i0 92.537 100.965174129353 201 15 100 0 1 201 5530 5330 HIV-1 isolate LB082_1 from Cameroon, partial genome blastn 20294 289 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530243 25530243 PRJEB8827g_S_NODE_3025_length_197_cov_2.487654_g3004_i0 PRJEB8827 3025 197 2.487654 4.9006783799999996 Human immunodeficiency virus 1 11676 Viruses Viruses 219 1.59e-52   NTclustered gi|46946834|gb|AY521630.1| 11676 g3004 i0 87.5 94.741116751269 192 21 97 3 1 191 8241 8052 HIV-1 isolate DDJ360 from Senegal gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), and tat protein (tat) genes, complete cds; rev protein-like gene, complete sequence; and vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 18664 219 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530247 25530247 PRJEB8827g_S_NODE_353_length_425_cov_25.748718_g334_i0 PRJEB8827 353 425 25.748718 109.4320515 Human immunodeficiency virus 1 11676 Viruses Viruses 747 0   NTclustered gi|766625868|gb|KJ704792.1| 11676 g334 i0 98.578 99.3811764705882 422 6 99 0 4 425 1498 1077 HIV-1 isolate NYC4 from USA, partial genome blastn 42237 747 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530248 25530248 PRJEB8827g_S_NODE_3769_length_186_cov_10.953642_g3748_i0 PRJEB8827 3769 186 10.953642 20.37377412 Human immunodeficiency virus 1 11676 Viruses Viruses 289 1.11e-73   NTclustered gi|1963744883|gb|MT794754.1| 11676 g3748 i0 94.624 100 186 10 100 0 1 186 211 396 HIV-1 clone MM34.PLAS.SGS.00192.039 from United Kingdom rev protein (rev) and tat protein (tat) genes, partial cds; vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds blastn 18600 289 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530255 25530255 PRJEB8827g_S_NODE_441_length_388_cov_4.237960_g420_i0 PRJEB8827 441 388 4.23796 16.4432848 Human immunodeficiency virus 1 11676 Viruses Viruses 518 3.04e-142   NTclustered gi|60651975|gb|AY835771.1| 11676 g420 i0 90.979 100 388 29 100 1 1 388 6347 5966 HIV-1 isolate 5082-86 clone pbf26 from USA, complete genome blastn 38800 518 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530259 25530259 PRJEB8827g_S_NODE_537_length_362_cov_41.018349_g516_i0 PRJEB8827 537 362 41.018349 148.48642338 Human immunodeficiency virus 1 11676 Viruses Viruses 368 2.9999999999999997e-97   NTclustered gi|658116633|gb|KJ669940.1| 11676 g516 i0 85.714 99.0414364640884 364 34 96 10 3 348 1446 1083 HIV-1 isolate M127_27031991_F7 from Netherlands envelope glycoprotein gene, partial cds blastn 35853 368 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530261 25530261 PRJEB8827g_S_NODE_5665_length_173_cov_22.826087_g5644_i0 PRJEB8827 5665 173 22.826087 39.48913051 Human immunodeficiency virus 1 11676 Viruses Viruses 283 4.729999999999999e-72   NTclustered gi|140089867|gb|EF179881.1| 11676 g5644 i0 96.023 102.21387283237 176 4 100 2 1 173 1098 923 HIV-1 isolate LTNP 5005 clone CL1 from France envelope glylcoprotein (env) gene, partial cds blastn 17683 283 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530265 25530265 PRJEB8827g_S_NODE_5881_length_172_cov_11.343066_g5860_i0 PRJEB8827 5881 172 11.343066 19.51007352 Human immunodeficiency virus 1 11676 Viruses Viruses 254 3.68e-63   NTclustered gi|920764061|gb|KT283826.1| 11676 g5860 i0 93.605 100.441860465116 172 8 100 1 1 172 1267 1099 HIV-1 isolate P1031_46.1_1A from USA envelope glycoprotein (env) gene, complete cds blastn 17276 254 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530275 25530275 PRJEB8827g_S_NODE_7873_length_165_cov_0.976923_g7852_i0 PRJEB8827 7873 165 0.976923 1.61192295 Human immunodeficiency virus 1 11676 Viruses Viruses 213 5.98e-51   NTclustered gi|313511189|gb|HQ595805.1| 11676 g7852 i0 91.195 92.5454545454545 159 11 95 3 1 157 1343 1186 HIV-1 isolate T520b_F9 from United Kingdom envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds blastn 15270 213 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530278 25530278 PRJEB8827g_S_NODE_8169_length_164_cov_23.775194_g8148_i0 PRJEB8827 8169 164 23.775194 38.99131816 Human immunodeficiency virus 1 11676 Viruses Viruses 287 3.45e-73   NTclustered gi|1828968767|gb|MT033675.1| 11676 g8148 i0 98.171 99.3414634146341 164 3 100 0 1 164 5478 5315 HIV-1 isolate 112404_C02 from USA gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; nonfunctional tat protein (tat) gene, complete sequence; and rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 16292 287 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530280 25530280 PRJEB8827g_S_NODE_897_length_304_cov_4.557621_g876_i0 PRJEB8827 897 304 4.557621 13.85516784 Human immunodeficiency virus 1 11676 Viruses Viruses 468 2.37e-127   NTclustered gi|641387525|gb|KJ528775.1| 11676 g876 i0 94.702 99.3618421052632 302 15 99 1 3 304 112 412 HIV-1 isolate SHAC89S from USA envelope glycoprotein (env) gene, partial cds blastn 30206 468 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530282 25530282 PRJEB8827g_S_NODE_945_length_298_cov_3.615970_g924_i0 PRJEB8827 945 298 3.61597 10.7755906 Human immunodeficiency virus 1 11676 Viruses Viruses 370 6.73e-98   NTclustered gi|335346845|gb|JN002022.1| 11676 g924 i0 89.262 94.2214765100671 298 29 99 3 1 297 1494 1199 HIV-1 isolate CB3sc4 from Australia envelope glycoprotein (env) gene, complete cds blastn 28078 370 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530288 25530288 PRJEB8827h_S_NODE_1129_length_282_cov_5.222672_g1110_i0 PRJEB8827 1129 282 5.222672 14.72793504 Human immunodeficiency virus 1 11676 Viruses Viruses 355 1.7699999999999997e-93   NTclustered gi|2672113129|gb|PP155043.1| 11676 g1110 i0 89.399 100.13475177305 283 28 100 2 1 282 1117 836 HIV-1 isolate NAB078 from India envelope glycoprotein (env) gene, complete cds blastn 28238 355 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530289 25530289 PRJEB8827h_S_NODE_1217_length_275_cov_5.737500_g1198_i0 PRJEB8827 1217 275 5.7375 15.778125 Human immunodeficiency virus 1 11676 Viruses Viruses 248 3e-61   NTclustered gi|443297450|gb|KC187493.1| 11676 g1198 i0 83.813 100.210909090909 278 27 100 15 1 275 582 320 HIV-1 isolate 4049_Plasma_Visit1_amplicon30 from Malawi envelope glycoprotein (env) gene, complete cds blastn 27558 248 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530293 25530293 PRJEB8827h_S_NODE_1321_length_266_cov_22.935065_g1302_i0 PRJEB8827 1321 266 22.935065 61.0072729 Human immunodeficiency virus 1 11676 Viruses Viruses 425 1.24e-114   NTclustered gi|846121841|gb|KR861271.1| 11676 g1302 i0 95.489 100.781954887218 266 12 100 0 1 266 787 1052 HIV-1 isolate bcpp_00155_amp2 from Botswana tat protein (tat) gene, partial cds; nonfunctional rev protein (rev) gene, complete sequence; and truncated vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 26808 425 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530295 25530295 PRJEB8827h_S_NODE_13617_length_187_cov_2.815789_g13598_i0 PRJEB8827 13617 187 2.815789 5.26552543 Human immunodeficiency virus 1 11676 Viruses Viruses 296 6.7e-76   NTclustered gi|1789282432|gb|MK458049.1| 11676 g13598 i0 95.263 91.2780748663102 190 3 98 1 1 184 2732 2921 HIV-1 isolate 074-A-109-1-1_w4_285 from Botswana defective genome blastn 17069 296 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530302 25530302 PRJEB8827h_S_NODE_1489_length_256_cov_3.506787_g1470_i0 PRJEB8827 1489 256 3.506787 8.97737472 Human immunodeficiency virus 1 11676 Viruses Viruses 372 1.57e-98   NTclustered gi|920670073|gb|KR820295.1| 11676 g1470 i0 92.941 98.94921875 255 18 99 0 2 256 5441 5695 HIV-1 isolate Z331F_15Apr09_PL_NFLG_SGA12 from Zambia gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 25331 372 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530310 25530310 PRJEB8827h_S_NODE_1793_length_241_cov_10.053398_g1774_i0 PRJEB8827 1793 241 10.053398 24.22868918 Human immunodeficiency virus 1 11676 Viruses Viruses 292 1.17e-74   NTclustered gi|472827311|gb|KC629270.1| 11676 g1774 i0 89.167 99.850622406639 240 19 99 7 4 241 938 704 HIV-1 isolate RB_332_14R from Botswana envelope glycoprotein (env) gene, partial cds blastn 24064 292 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530317 25530317 PRJEB8827h_S_NODE_209_length_472_cov_10.695652_g190_i0 PRJEB8827 209 472 10.695652 50.48347744 Human immunodeficiency virus 1 11676 Viruses Viruses 675 0   NTclustered gi|12957365|gb|AF325762.1|AF325762 11676 g190 i0 92.585 100.76906779661 472 32 100 2 1 472 1230 762 HIV-1 isolate TV019-82 from South Africa vif protein (vif) and vpr protein (vpr) genes, complete cds; tat protein (tat) and rev protein (rev) genes, partial cds; and vpu protein (vpu) gene, complete cds blastn 47563 675 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530324 25530324 PRJEB8827h_S_NODE_2401_length_223_cov_29.813830_g2382_i0 PRJEB8827 2401 223 29.81383 66.4848409 Human immunodeficiency virus 1 11676 Viruses Viruses 348 2.2500000000000002e-91   NTclustered gi|1145096|gb|U36139.1|HIV1U36139 11676 g2382 i0 94.69 98.8565022421525 226 9 100 1 1 223 657 432 Human immunodeficiency virus type 1 sample P5.28-7, envelope glycoprotein (env) gene, C2-V5, partial cds blastn 22045 348 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530328 25530328 PRJEB8827h_S_NODE_2513_length_221_cov_7.510753_g2494_i0 PRJEB8827 2513 221 7.510753 16.59876413 Human immunodeficiency virus 1 11676 Viruses Viruses 375 1.0199999999999998e-99   NTclustered gi|846121841|gb|KR861271.1| 11676 g2494 i0 97.285 101.199095022624 221 6 100 0 1 221 1183 1403 HIV-1 isolate bcpp_00155_amp2 from Botswana tat protein (tat) gene, partial cds; nonfunctional rev protein (rev) gene, complete sequence; and truncated vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 22365 375 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530351 25530351 PRJEB8827h_S_NODE_39505_length_166_cov_2.793893_g39486_i0 PRJEB8827 39505 166 2.793893 4.63786238 Human immunodeficiency virus 1 11676 Viruses Viruses 241 2.76e-59   NTclustered gi|846122008|gb|KR861305.1| 11676 g39486 i0 92.771 100.602409638554 166 12 100 0 1 166 1328 1163 HIV-1 isolate bcpp_00421_amp2 from Botswana tat protein (tat) gene, partial cds; truncated rev protein (rev) gene, complete cds; nonfunctional truncated vpu protein (vpu) and nonfunctional envelope glycoprotein (env) genes, complete sequence; truncated envelope glycoprotein (vpu) gene, complete cds; and nonfunctional truncated nef protein (nef) gene, complete sequence blastn 16700 241 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530358 25530358 PRJEB8827h_S_NODE_433_length_385_cov_4.854286_g414_i0 PRJEB8827 433 385 4.854286 18.6890011 Human immunodeficiency virus 1 11676 Viruses Viruses 403 8.81e-108   NTclustered gi|1527253281|gb|MK205940.1| 11676 g414 i0 85.938 100.335064935065 384 46 99 7 1 383 1349 973 HIV-1 isolate CAP255_3100_031wpi_12JB from South Africa envelope glycoprotein (env) gene, complete cds blastn 38629 403 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530367 25530367 PRJEB8827h_S_NODE_49929_length_152_cov_7.948718_g49910_i0 PRJEB8827 49929 152 7.948718 12.08205136 Human immunodeficiency virus 1 11676 Viruses Viruses 176 7.07e-40   NTclustered gi|262211541|gb|GU080170.1| 11676 g49910 i0 87.582 101.572368421053 153 17 100 2 1 152 1105 1256 HIV-1 clone 704MC012F from South Africa env gene, complete sequence blastn 15439 176 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530373 25530373 PRJEB8827h_S_NODE_51449_length_151_cov_1.491379_g51430_i0 PRJEB8827 51449 151 1.491379 2.25198229 Human immunodeficiency virus 1 11676 Viruses Viruses 241 2.4500000000000008e-59   NTclustered gi|2038124600|gb|MW523106.1| 11676 g51430 i0 95.364 97.4304635761589 151 7 100 0 1 151 136 286 HIV-1 isolate 01KBH3-17532 from South Korea vif protein (vif) and vpr protein (vpr) genes, complete cds; and tat protein (tat) and rev protein (rev) genes, partial cds blastn 14712 241 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530384 25530384 PRJEB8827h_S_NODE_673_length_335_cov_12.540000_g654_i0 PRJEB8827 673 335 12.54 42.009 Human immunodeficiency virus 1 11676 Viruses Viruses 329 1.3e-85   NTclustered gi|1527253287|gb|MK205943.1| 11676 g654 i0 84.615 100.286567164179 338 45 99 7 3 335 973 1308 HIV-1 isolate CAP255_3100_031wpi_04JB from South Africa envelope glycoprotein (env) gene, complete cds blastn 33596 329 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25530390 25530390 PRJEB8827h_S_NODE_825_length_314_cov_8.648746_g806_i0 PRJEB8827 825 314 8.648746 27.15706244 Human immunodeficiency virus 1 11676 Viruses Viruses 357 5.56e-94   NTclustered gi|49790394|gb|AY635649.1| 11676 g806 i0 88.814 97.0222929936306 295 28 94 4 1 294 611 321 HIV-1 isolate Binyang-429 from China envelope glycoprotein (env) gene, partial cds blastn 30465 357 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25617801 25617801 PRJEB8827g_S_NODE_577_length_353_cov_11.421384_g556_i0 PRJEB8827 577 353 11.421384 40.31748552 Lentivirus 11646 Viruses Viruses 558 1.61e-154   NTclustered gi|140089922|gb|EF179937.1| 11676 g556 i0 95.198 100.084985835694 354 15 100 2 1 353 432 80 HIV-1 isolate LTNP 5008 clone CL15 from France envelope glylcoprotein (env) gene, partial cds blastn 35330 558 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666146 25666146 PRJEB8827g_S_NODE_1026_length_290_cov_6.513725_g1005_i0 PRJEB8827 1026 290 6.513725 18.8898025 Human immunodeficiency virus 1 11676 Viruses Viruses 403 6.44e-108   NTclustered gi|328794|gb|L03699.1|HIVTN239 11676 g1005 i0 92.254 96.4068965517241 284 22 98 0 1 284 274 557 Human immunodeficiency virus type 1 (CM239) envelope glycoprotein (env) gene, 5' end blastn 27958 403 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666154 25666154 PRJEB8827g_S_NODE_122_length_797_cov_3.393701_g113_i0 PRJEB8827 122 797 3.393701 27.04779697 Human immunodeficiency virus 1 11676 Viruses Viruses 1068 0   NTclustered gi|1835285571|gb|MN116205.1| 11676 g113 i0 90.841 99.9573400250941 797 73 100 0 1 797 5578 4782 HIV-1 isolate CG-0422-02V from Democratic Republic of the Congo, complete genome blastn 79666 1068 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666157 25666157 PRJEB8827g_S_NODE_1322_length_266_cov_6.493506_g1301_i0 PRJEB8827 1322 266 6.493506 17.27272596 Human immunodeficiency virus 1 11676 Viruses Viruses 322 1.68e-83   NTclustered gi|222428502|gb|FJ469738.1| 11676 g1301 i0 88.519 101.033834586466 270 26 100 3 1 266 6643 6375 HIV-1 isolate L805 from USA gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and envelope glycoprotein (env) and nef protein (nef) genes, complete cds blastn 26875 322 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666160 25666160 PRJEB8827g_S_NODE_13602_length_153_cov_1.940678_g13581_i0 PRJEB8827 13602 153 1.940678 2.96923734 Human immunodeficiency virus 1 11676 Viruses Viruses 230 5.39e-56   NTclustered gi|1780580107|gb|MG729332.1| 11676 g13581 i0 93.464 99.9542483660131 153 10 100 0 1 153 347 499 HIV-1 isolate HIVVIF058-2016MX from Mexico vif protein (vif) gene, complete cds; and pol protein (pol) and vpr protein (vpr) genes, partial cds blastn 15293 230 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666165 25666165 PRJEB8827g_S_NODE_1490_length_254_cov_8.931507_g1469_i0 PRJEB8827 1490 254 8.931507 22.68602778 Human immunodeficiency virus 1 11676 Viruses Viruses 327 3.42e-85   NTclustered gi|1089680914|gb|KX841776.1| 11676 g1469 i0 93.607 87.7716535433071 219 14 86 0 1 219 401 183 HIV-1 isolate REA05e_Timepoint1_DNA_23 from Denmark envelope glycoprotein (env) gene, partial cds blastn 22294 327 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666168 25666168 PRJEB8827g_S_NODE_1530_length_251_cov_4.532407_g1509_i0 PRJEB8827 1530 251 4.532407 11.37634157 Human immunodeficiency virus 1 11676 Viruses Viruses 379 9.189999999999998e-101   NTclustered gi|1234177235|gb|MF373167.1| 11676 g1509 i0 95.378 94.9003984063745 238 11 95 0 14 251 1440 1203 HIV-1 isolate 064GR from Sweden, partial genome blastn 23820 379 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666169 25666169 PRJEB8827g_S_NODE_1546_length_250_cov_11.306977_g1525_i0 PRJEB8827 1546 250 11.306977 28.2674425 Human immunodeficiency virus 1 11676 Viruses Viruses 357 4.28e-94   NTclustered gi|30794658|gb|AY247224.1| 11676 g1525 i0 92.4 99.928 250 19 100 0 1 250 518 767 HIV-1 isolate 81NY3 from USA envelope glycoprotein (env) gene, complete cds blastn 24982 357 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666173 25666173 PRJEB8827g_S_NODE_162_length_594_cov_4.974955_g148_i0 PRJEB8827 162 594 4.974955 29.5512327 Human immunodeficiency virus 1 11676 Viruses Viruses 593 7.779999999999998e-165   NTclustered gi|158701135|gb|EU164101.1| 11676 g148 i0 85 99.3468013468013 600 72 100 9 1 594 866 279 HIV-1 isolate QA584.88M.Ev1v5.L from Kenya envelope glycoprotein (env) gene, partial cds blastn 59012 593 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666175 25666175 PRJEB8827g_S_NODE_1682_length_241_cov_16.446602_g1661_i0 PRJEB8827 1682 241 16.446602 39.63631082 Human immunodeficiency virus 1 11676 Viruses Viruses 405 1.45e-108   NTclustered gi|428132866|gb|JX263608.1| 11676 g1661 i0 97.083 99.6597510373444 240 7 99 0 2 241 663 902 HIV-1 isolate YNLC09R216 from China gag protein (gag) gene, partial cds blastn 24018 405 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666177 25666177 PRJEB8827g_S_NODE_1722_length_239_cov_2.970588_g1701_i0 PRJEB8827 1722 239 2.970588 7.09970532 Human immunodeficiency virus 1 11676 Viruses Viruses 372 1.45e-98   NTclustered gi|386877703|gb|JQ902462.1| 11676 g1701 i0 95.299 98.7615062761506 234 11 98 0 6 239 235 2 HIV-1 isolate H18855_9S2 from Netherlands envelope glycoprotein gene, partial cds blastn 23604 372 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666178 25666178 PRJEB8827g_S_NODE_1778_length_236_cov_4.512438_g1757_i0 PRJEB8827 1778 236 4.512438 10.64935368 Human immunodeficiency virus 1 11676 Viruses Viruses 351 1.86e-92   NTclustered gi|1798179644|gb|MN695004.1| 11676 g1757 i0 94.323 99.5550847457627 229 13 97 0 2 230 4697 4469 HIV-1 isolate G115399 from Uganda gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; tat protein (tat) and rev protein (rev) genes, partial cds; nonfunctional vpu protein (vpu) gene, complete sequence; and envelope glycoprotein (env) gene, partial cds blastn 23495 351 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666180 25666180 PRJEB8827g_S_NODE_1810_length_234_cov_9.633166_g1789_i0 PRJEB8827 1810 234 9.633166 22.54160844 Human immunodeficiency virus 1 11676 Viruses Viruses 322 1.45e-83   NTclustered gi|2104546236|gb|MZ344733.1| 11676 g1789 i0 91.453 100.303418803419 234 20 100 0 1 234 332 99 HIV-1 strain CITN_003_C04D01_EM10_7 from USA envelope glycoprotein (env) gene, partial cds blastn 23471 322 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666185 25666185 PRJEB8827g_S_NODE_1986_length_225_cov_4.842105_g1965_i0 PRJEB8827 1986 225 4.842105 10.89473625 Human immunodeficiency virus 1 11676 Viruses Viruses 296 8.37e-76   NTclustered gi|1009520724|gb|KU685592.1| 11676 g1965 i0 90.393 98.4711111111111 229 16 99 1 3 225 513 741 HIV-1 isolate EUR-0033 from Spain gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 22156 296 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666187 25666187 PRJEB8827g_S_NODE_2034_length_223_cov_19.063830_g2013_i0 PRJEB8827 2034 223 19.06383 42.5123409 Human immunodeficiency virus 12721 Viruses Viruses 315 2.29e-81   NTclustered gi|564474690|gb|KC595160.1| 12721 g2013 i0 92.07 102.273542600897 227 13 100 5 1 223 274 499 Human immunodeficiency virus isolate 3227050_2Fc1 envelope glycoprotein (env) gene, complete cds blastn 22807 315 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Human immunodeficiency virus
25666188 25666188 PRJEB8827g_S_NODE_2090_length_221_cov_3.145161_g2069_i0 PRJEB8827 2090 221 3.145161 6.95080581 Human immunodeficiency virus 1 11676 Viruses Viruses 320 4.86e-83   NTclustered gi|38491800|gb|AY371156.1| 11676 g2069 i0 92.76 100.570135746606 221 16 100 0 1 221 5198 5418 HIV-1 isolate 01CM.0175BA from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, complete cds; and nef protein (nef) gene, partial cds blastn 22226 320 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666190 25666190 PRJEB8827g_S_NODE_218_length_509_cov_10.848101_g202_i0 PRJEB8827 218 509 10.848101 55.21683409 Human immunodeficiency virus 1 11676 Viruses Viruses 555 3.109999999999999e-153   NTclustered gi|1036307246|gb|KX168073.1| 11676 g202 i0 86.68 102.080550098232 518 48 100 15 1 509 656 151 HIV-1 isolate MF520.W14M.C2 from Kenya envelope glycoprotein (env) gene, complete cds blastn 51959 555 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666199 25666199 PRJEB8827g_S_NODE_2450_length_209_cov_9.660920_g2429_i0 PRJEB8827 2450 209 9.66092 20.1913228 Human immunodeficiency virus 1 11676 Viruses Viruses 331 2.1e-86   NTclustered gi|310877667|gb|HQ110664.1| 11676 g2429 i0 95.215 99.9473684210526 209 10 100 0 1 209 1056 848 HIV-1 clone 1989b2 from USA envelope glycoprotein (env) gene, complete cds blastn 20889 331 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666200 25666200 PRJEB8827g_S_NODE_2714_length_203_cov_8.625000_g2693_i0 PRJEB8827 2714 203 8.625 17.50875 Human immunodeficiency virus 1 11676 Viruses Viruses 348 2.0100000000000006e-91   NTclustered gi|1351110378|gb|MG756523.1| 11676 g2693 i0 97.537 100.12807881773401 203 5 100 0 1 203 635 433 HIV-1 isolate B_CH-2015_MP035_BLOOD_X3_C97_S0014_C0022 nonfunctional envelope glycoprotein (env) gene, partial sequence blastn 20326 348 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666209 25666209 PRJEB8827g_S_NODE_338_length_429_cov_6.802030_g319_i0 PRJEB8827 338 429 6.80203 29.1807087 Human immunodeficiency virus 1 11676 Viruses Viruses 545 1.56e-150   NTclustered gi|300510728|gb|GU471633.1| 11676 g319 i0 95.087 91.9020979020979 346 17 81 0 65 410 346 1 HIV-1 isolate C4-09 from Switzerland envelope glycoprotein (env) gene, partial cds blastn 39426 545 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666210 25666210 PRJEB8827g_S_NODE_354_length_425_cov_21.397436_g335_i0 PRJEB8827 354 425 21.397436 90.939103 Human immunodeficiency virus 1 11676 Viruses Viruses 713 0   NTclustered gi|1732595154|gb|MK548808.1| 11676 g335 i0 96.941 99.4470588235294 425 13 100 0 1 425 1107 1531 HIV-1 isolate 92CNS5-16662 from South Korea gag protein gene, complete cds blastn 42265 713 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666213 25666213 PRJEB8827g_S_NODE_3786_length_186_cov_1.139073_g3765_i0 PRJEB8827 3786 186 1.139073 2.11867578 Human immunodeficiency virus 1 11676 Viruses Viruses 291 3.1e-74   NTclustered gi|56609023|gb|AY838748.1| 11676 g3765 i0 95.58 98.3333333333333 181 8 97 0 6 186 543 363 HIV-1 isolate 272M from South Africa nef protein (nef) gene, partial cds blastn 18290 291 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666215 25666215 PRJEB8827g_S_NODE_4218_length_182_cov_1.639456_g4197_i0 PRJEB8827 4218 182 1.639456 2.98380992 Human immunodeficiency virus 1 11676 Viruses Viruses 276 8.440000000000001e-70   NTclustered gi|525645442|gb|KC807955.1| 11676 g4197 i0 94.413 98.9175824175824 179 10 98 0 3 181 2104 2282 HIV-1 isolate CNXJ09466 clone R3 from China envelope glycoprotein (env) gene, complete cds blastn 18003 276 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666220 25666220 PRJEB8827g_S_NODE_514_length_368_cov_51.216216_g493_i0 PRJEB8827 514 368 51.216216 188.47567488 Human immunodeficiency virus 1 11676 Viruses Viruses 433 1.0699999999999999e-116   NTclustered gi|769793924|gb|KM082110.1| 11676 g493 i0 88.235 100.766304347826 374 29 100 9 1 368 1629 1265 HIV-1 isolate 1853DNAPBMC22JUN2011.P6M18 from USA vpu protein (vpu) and envelope glycoprotein (env) genes, complete cds blastn 37082 433 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666222 25666222 PRJEB8827g_S_NODE_570_length_354_cov_14.203762_g549_i0 PRJEB8827 570 354 14.203762 50.28131748 Human immunodeficiency virus 1 11676 Viruses Viruses 399 1.0399999999999998e-106   NTclustered gi|83854080|gb|DQ313246.1| 11676 g549 i0 87.784 102.169491525424 352 29 99 6 4 354 612 274 HIV-1 strain MACS4(4/116) from USA envelope glycoprotein (env) gene, complete cds blastn 36168 399 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666224 25666224 PRJEB8827g_S_NODE_650_length_340_cov_5.924590_g629_i0 PRJEB8827 650 340 5.92459 20.143606 Human immunodeficiency virus 1 11676 Viruses Viruses 540 5.6199999999999996e-149   NTclustered gi|114801551|gb|DQ854075.1| 11676 g629 i0 95.294 100.105882352941 340 16 100 0 1 340 425 86 HIV-1 isolate 14259.1 from USA vpr protein (vpr) gene, complete cds; and tat protein (tat) gene, partial cds blastn 34036 540 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666225 25666225 PRJEB8827g_S_NODE_6626_length_169_cov_6.574627_g6605_i0 PRJEB8827 6626 169 6.5746270000000004 11.11111963 Human immunodeficiency virus 1 11676 Viruses Viruses 285 1.28e-72   NTclustered gi|1560001327|gb|MK169789.1| 11676 g6605 i0 97.041 100 169 5 100 0 1 169 846 1014 HIV-1 isolate 120-LN-69H4 from USA, partial genome blastn 16900 285 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666229 25666229 PRJEB8827g_S_NODE_7538_length_166_cov_2.396947_g7517_i0 PRJEB8827 7538 166 2.396947 3.97893202 Human immunodeficiency virus 1 11676 Viruses Viruses 278 2.11e-70   NTclustered gi|353082556|gb|JF960074.1| 11676 g7517 i0 96.97 99.9096385542169 165 5 99 0 2 166 349 185 HIV-1 isolate ZPHI194-01 from Switzerland envelope glycoprotein (env) gene, partial cds blastn 16585 278 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666238 25666238 PRJEB8827g_S_NODE_8930_length_162_cov_2.188976_g8909_i0 PRJEB8827 8930 162 2.188976 3.54614112 Human immunodeficiency virus 1 11676 Viruses Viruses 259 7.400000000000001e-65   NTclustered gi|1131387712|gb|KX907351.1| 11676 g8909 i0 95.652 100 161 7 99 0 2 162 5719 5559 HIV-1 isolate CO0778V2 from Tanzania, partial genome blastn 16200 259 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666239 25666239 PRJEB8827g_S_NODE_898_length_304_cov_4.368030_g877_i0 PRJEB8827 898 304 4.36803 13.2788112 Human immunodeficiency virus 1 11676 Viruses Viruses 468 2.37e-127   NTclustered gi|294722089|gb|GQ433014.1| 11676 g877 i0 94.426 100.5 305 16 100 1 1 304 1244 940 HIV-1 clone CMNYU6544(12)22 from Cameroon pol protein (pol) gene, partial cds; vif protein (vif) and vpr protein (vpr) genes, complete cds; and tat protein (tat), rev protein (rev), vpu protein (vpu), and envelope glycoprotein (env) genes, partial cds blastn 30552 468 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666241 25666241 PRJEB8827g_S_NODE_922_length_301_cov_28.255639_g901_i0 PRJEB8827 922 301 28.255639 85.04947339 Human immunodeficiency virus 1 11676 Viruses Viruses 484 2.3299999999999996e-132   NTclustered gi|407732745|gb|JX446812.1| 11676 g901 i0 95.681 99.9601328903654 301 13 100 0 1 301 990 690 HIV-1 isolate AA011a02L from Thailand gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif) and vpr protein (vpr) genes, complete cds blastn 30088 484 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666243 25666243 PRJEB8827h_S_NODE_1050_length_289_cov_3.653543_g1031_i0 PRJEB8827 1050 289 3.653543 10.55873927 Human immunodeficiency virus 1 11676 Viruses Viruses 405 1.78e-108   NTclustered gi|339642282|gb|HQ657530.1| 11676 g1031 i0 92.096 100.342560553633 291 18 99 3 1 287 311 22 HIV-1 isolate 22271 from Taiwan envelope glycoprotein (env) gene, partial cds blastn 28999 405 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666245 25666245 PRJEB8827h_S_NODE_114_length_549_cov_5.035019_g96_i0 PRJEB8827 114 549 5.035019 27.64225431 Human immunodeficiency virus 1 11676 Viruses Viruses 815 0   NTclustered gi|255739164|gb|FJ606180.1| 11676 g96 i0 93.443 99.896174863388 549 36 100 0 1 549 1296 748 HIV-1 isolate ZM132F from Zambia gag protein (gag) gene, complete cds blastn 54843 815 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666252 25666252 PRJEB8827h_S_NODE_1322_length_266_cov_20.017316_g1303_i0 PRJEB8827 1322 266 20.017316 53.24606056 Human immunodeficiency virus 1 11676 Viruses Viruses 416 7.489999999999999e-112   NTclustered gi|316937987|gb|GU329415.1| 11676 g1303 i0 94.796 100.860902255639 269 11 100 3 1 266 1061 793 HIV-1 isolate 1 from Zambia envelope glycoprotein (env) gene, complete cds blastn 26829 416 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666256 25666256 PRJEB8827h_S_NODE_13618_length_187_cov_2.717105_g13599_i0 PRJEB8827 13618 187 2.717105 5.08098635 Human immunodeficiency virus 1 11676 Viruses Viruses 248 1.9e-61   NTclustered gi|56199259|gb|AY621432.1| 11676 g13599 i0 90.426 100.577540106952 188 16 100 2 1 187 321 135 HIV-1 isolate M6 envelope glycoprotein (env) gene, partial cds blastn 18808 248 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666272 25666272 PRJEB8827h_S_NODE_2306_length_225_cov_6.357895_g2287_i0 PRJEB8827 2306 225 6.357895 14.30526375 Human immunodeficiency virus 1 11676 Viruses Viruses 250 6.6099999999999996e-62   NTclustered gi|316937827|gb|GU329329.1| 11676 g2287 i0 88.095 93.7511111111111 210 25 93 0 3 212 576 785 HIV-1 isolate 48 from Zambia envelope glycoprotein (env) gene, complete cds blastn 21094 250 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666273 25666273 PRJEB8827h_S_NODE_2362_length_224_cov_1.973545_g2343_i0 PRJEB8827 2362 224 1.973545 4.4207408 Human immunodeficiency virus 1 11676 Viruses Viruses 265 2.35e-66   NTclustered gi|163637173|gb|EU272216.1| 11676 g2343 i0 90.863 89.5758928571429 197 18 88 0 28 224 379 183 HIV-1 clone 1006 from China envelope glycoprotein (env) gene, partial cds blastn 20065 265 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666279 25666279 PRJEB8827h_S_NODE_2626_length_219_cov_16.673913_g2607_i0 PRJEB8827 2626 219 16.673913 36.51586947 Human immunodeficiency virus 1 11676 Viruses Viruses 279 8.16e-71   NTclustered gi|339718095|gb|JN108092.1| 11676 g2607 i0 90 101.077625570776 220 17 100 5 1 219 913 698 HIV-1 isolate 1468MD3_MW_C_02 from Malawi envelope glycoprotein (env) gene, partial cds blastn 22136 279 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666284 25666284 PRJEB8827h_S_NODE_27850_length_177_cov_1.401408_g27831_i0 PRJEB8827 27850 177 1.401408 2.48049216 Human immunodeficiency virus 1 11676 Viruses Viruses 207 3.02e-49   NTclustered gi|80971977|gb|DQ187024.1| 11676 g27831 i0 87.64 99.593220338983 178 20 100 2 1 177 1 177 HIV-1 isolate MB201.P32M.E13.v1v2 from Kenya envelope glycoprotein (env) gene, partial cds blastn 17628 207 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666287 25666287 PRJEB8827h_S_NODE_2946_length_215_cov_2.772222_g2927_i0 PRJEB8827 2946 215 2.772222 5.9602772999999996 Human immunodeficiency virus 1 11676 Viruses Viruses 359 9.969999999999999e-95   NTclustered gi|354720631|gb|JF680931.1| 11676 g2927 i0 98.058 97.5906976744186 206 4 96 0 1 206 1469 1264 HIV-1 isolate P430.p3 nonfunctional env protein (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds blastn 20982 359 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666303 25666303 PRJEB8827h_S_NODE_40250_length_165_cov_2.346154_g40231_i0 PRJEB8827 40250 165 2.346154 3.8711541 Human immunodeficiency virus 1 11676 Viruses Viruses 270 3.4999999999999993e-68   NTclustered gi|13569287|gb|AF286231.1|AF286231 11676 g40231 i0 96.341 99.2424242424242 164 6 99 0 2 165 4642 4479 HIV-1 strain 98IN012 from India, complete genome blastn 16375 270 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666304 25666304 PRJEB8827h_S_NODE_40266_length_165_cov_1.184615_g40247_i0 PRJEB8827 40266 165 1.184615 1.95461475 Human immunodeficiency virus 1 11676 Viruses Viruses 276 7.52e-70   NTclustered gi|846121800|gb|KR861263.1| 11676 g40247 i0 96.97 99.9636363636364 165 4 100 1 1 165 233 70 HIV-1 isolate bcpp_00069_amp2 from Botswana tat protein (tat) gene, partial cds; truncated rev protein (rev) and vpu protein (vpu) genes, complete cds; nonfunctional envelope glycoprotein (env) gene, complete sequence; and truncated envelope glycoprotein (vpu) and truncated nef protein (nef) genes, complete cds blastn 16494 276 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666310 25666310 PRJEB8827h_S_NODE_42802_length_160_cov_18.120000_g42783_i0 PRJEB8827 42802 160 18.12 28.992 Human immunodeficiency virus 1 11676 Viruses Viruses 174 2.71e-39   NTclustered gi|396076501|gb|JX239391.1| 11676 g42783 i0 86.42 102.24375 162 18 100 4 1 160 1118 1277 HIV-1 isolate ZM282M_12APR06_PL1 from Zambia envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds blastn 16359 174 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666327 25666327 PRJEB8827h_S_NODE_49930_length_152_cov_6.974359_g49911_i0 PRJEB8827 49930 152 6.974359 10.60102568 Human immunodeficiency virus 1 11676 Viruses Viruses 161 1.98e-35   NTclustered gi|2165743884|gb|OK513965.1| 11676 g49911 i0 95.098 69.7039473684211 102 5 67 0 2 103 1604 1503 HIV-1 isolate 111B from Uganda envelope glycoprotein (env) gene, partial cds blastn 10595 161 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666333 25666333 PRJEB8827h_S_NODE_53538_length_150_cov_1.086957_g53519_i0 PRJEB8827 53538 150 1.086957 1.6304355 Human immunodeficiency virus 1 11676 Viruses Viruses 261 1.86e-65   NTclustered gi|2599479467|gb|OR582087.1| 11676 g53519 i0 98 96.5933333333333 150 3 100 0 1 150 1406 1257 HIV-1 isolate GRT144 from Switzerland pol protein (pol) gene, partial cds blastn 14489 261 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666336 25666336 PRJEB8827h_S_NODE_626_length_342_cov_39.133550_g607_i0 PRJEB8827 626 342 39.13355 133.836741 Human immunodeficiency virus 1 11676 Viruses Viruses 381 3.629999999999999e-101   NTclustered gi|325966672|gb|HM070659.1| 11676 g607 i0 86.969 101.324561403509 353 29 99 12 1 340 1151 1499 HIV-1 isolate 3902bmL_F2 from Malawi envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds blastn 34653 381 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666341 25666341 PRJEB8827h_S_NODE_818_length_315_cov_7.110714_g799_i0 PRJEB8827 818 315 7.110714 22.3987491 Human immunodeficiency virus 1 11676 Viruses Viruses 499 8.76e-137   NTclustered gi|334190632|gb|JF722874.1| 11676 g799 i0 95.238 99.8126984126984 315 15 100 0 1 315 632 946 HIV-1 isolate 1702M_04 from Malawi envelope glycoprotein (env) and vpu protein (vpu) genes, partial cds blastn 31441 499 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25666345 25666345 PRJEB8827h_S_NODE_922_length_300_cov_12.475472_g903_i0 PRJEB8827 922 300 12.475472 37.426416 Human immunodeficiency virus 1 11676 Viruses Viruses 357 5.28e-94   NTclustered gi|2250211769|gb|ON157031.1| 11676 g903 i0 89.347 99.6933333333333 291 22 97 4 10 300 1599 1318 HIV-1 isolate in1813-1 from China envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds blastn 29908 357 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25753824 25753824 PRJEB8827d_S_NODE_410_length_285_cov_5034.676000_g406_i0 PRJEB8827 410 285 5034.676 14348.8266 Viruses 10239 Viruses Viruses 108 5.54e-19   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g406 i0 98.361 22.5719298245614 61 1 21 0 225 285 9468 9528 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 6433 108 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25754029 25754029 PRJEB8827g_S_NODE_2962_length_198_cov_2.539877_g2941_i0 PRJEB8827 2962 198 2.539877 5.02895646 Lentivirus 11646 Viruses Viruses 327 2.55e-85   NTclustered gi|14289982|gb|AF377954.1| 11676 g2941 i0 96.465 99.9848484848485 198 7 100 0 1 198 4774 4577 HIV-1 isolate CM52885 from Cameroon gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds blastn 19797 327 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25802306 25802306 PRJEB8827g_S_NODE_10267_length_159_cov_3.145161_g10246_i0 PRJEB8827 10267 159 3.145161 5.00080599 Human immunodeficiency virus 1 11676 Viruses Viruses 222 9.479999999999999e-54   NTclustered gi|157778984|gb|EU023924.1| 11676 g10246 i0 94.444 93.5094339622642 144 8 91 0 16 159 567 424 HIV-1 isolate NAB6pre-cl_8 from Switzerland vpu protein (vpu) gene, complete cds; and envelope glycoprotein (env) gene, partial cds blastn 14868 222 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;