RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJEB83711" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 10 ✖

bioproject 1

  • PRJEB83711 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3970590 3970590 PRJEB83711_P_NODE_60064_length_252_cov_0.871508_g59798_i0 PRJEB83711 60064 252 0.871508 2.19620016 Methanobacterium sp. BRmetb2 2025350 Archaea Archaea 139 1.71e-28   NTclustered gi|1473087786|gb|CP022705.1| 2025350 g59798 i0 78.355 538.813492063492 231 39 98 11 18 242 478214 478439 MAG: Methanobacterium sp. BRmetb2 chromosome, complete genome blastn 135781 139 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BRmetb2
6522289 6522289 PRJEB83711_P_NODE_43366_length_281_cov_1.250000_g43100_i0 PRJEB83711 43366 281 1.25 3.5125 Methanosarcina sp. Kolksee 1434099 Archaea Archaea 503 5.95e-138   NTclustered gi|805394978|gb|CP009524.1| 1434099 g43100 i0 98.932 6 281 3 100 0 1 281 443473 443753 Methanosarcina sp. Kolksee, complete genome blastn 1686 503 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. Kolksee
6522841 6522841 PRJEB83711_P_NODE_67646_length_248_cov_0.891429_g67380_i0 PRJEB83711 67646 248 0.891429 2.21074392 Halococcus dombrowskii 179637 Archaea Archaea 385 1.95e-102   NTclustered gi|2221489803|gb|CP095005.1| 179637 g67380 i0 94.737 1.99193548387097 247 13 99 0 1 247 469881 470127 Halococcus dombrowskii strain H4 chromosome, complete genome blastn 494 385 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
11622789 11622789 PRJEB83711_P_NODE_52530_length_262_cov_1.386243_g52264_i0 PRJEB83711 52530 262 1.386243 3.63195666 Methanosarcina vacuolata 2215 Archaea Archaea 444 3.38e-120   NTclustered gi|805391208|gb|CP009520.1| 1434123 g52264 i0 97.328 7.08778625954198 262 6 100 1 1 262 1155291 1155551 Methanosarcina vacuolata Z-761, complete genome blastn 1857 444 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina vacuolata
16721593 16721593 PRJEB83711_P_NODE_78794_length_242_cov_0.923077_g78528_i0 PRJEB83711 78794 242 0.923077 2.23384634 Methanosarcina barkeri 2208 Archaea Archaea 387 5.26e-103   NTclustered gi|805398754|gb|CP009526.1| 1434109 g78528 i0 95.455 4 242 11 100 0 1 242 4141494 4141253 Methanosarcina barkeri str. Wiesmoor, complete genome blastn 968 387 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
17996540 17996540 PRJEB83711_P_NODE_82515_length_215_cov_9.070423_g82249_i0 PRJEB83711 82515 215 9.070423 19.50140945 Methanosalsum zhilinae 39669 Archaea Archaea 56.5 0.001   NTclustered gi|335929340|gb|CP002101.1| 679901 g82249 i0 100 0.13953488372093 30 0 14 0 47 76 1665167 1665138 Methanosalsum zhilinae DSM 4017, complete genome blastn 30 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosalsum Methanosalsum zhilinae
18850534 18850534 PRJEB83711_P_NODE_67175_length_248_cov_0.891429_g66909_i0 PRJEB83711 67175 248 0.891429 2.21074392 Saccharolobus 2100760 Archaea Archaea 54.7 0.006   NTclustered gi|2440481745|gb|CP046616.1| 43080 g66909 i0 100 1.08064516129032 29 0 12 0 139 167 1867082 1867054 Saccharolobus islandicus strain HVE 10/4 chromosome, complete genome blastn 268 54.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus
21821439 21821439 PRJEB83711_P_NODE_72138_length_245_cov_1.279070_g71872_i0 PRJEB83711 72138 245 1.27907 3.1337215 Methanobacterium formicicum 2162 Archaea Archaea 442 1.1199999999999994e-119   NTclustered gi|952971377|emb|LN734822.1| 2162 g71872 i0 99.184 5 245 2 100 0 1 245 122266 122022 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1225 442 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
24370536 24370536 PRJEB83711_P_NODE_73980_length_244_cov_1.473684_g73714_i0 PRJEB83711 73980 244 1.473684 3.59578896 Salinigranum rubrum 755307 Archaea Archaea 309 1.1800000000000002e-79   NTclustered gi|1336549475|gb|CP026309.1| 755307 g73714 i0 89.958 32.6188524590164 239 24 98 0 3 241 1737454 1737692 Salinigranum rubrum strain GX10 chromosome, complete genome blastn 7959 309 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Salinigranum Salinigranum rubrum
24370543 24370543 PRJEB83711_P_NODE_74300_length_244_cov_0.912281_g74034_i0 PRJEB83711 74300 244 0.912281 2.22596564 Natronorubrum daqingense 588898 Archaea Archaea 390 4.11e-104   NTclustered gi|1134979927|gb|CP019327.1| 588898 g74034 i0 95.492 2.12704918032787 244 11 100 0 1 244 2319454 2319211 Natronorubrum daqingense strain JX313, complete sequence blastn 519 390 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronorubrum Natronorubrum daqingense

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;