RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB83711" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB83711 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5246509 5246509 PRJEB83711_P_NODE_35065_length_305_cov_1.448276_g34799_i0 PRJEB83711 35065 305 1.448276 4.4172418 Philodina roseola 96448 Rotifera other_Eukaryota 564 2.95e-156   NTclustered gi|37785582|gb|AY210469.1| 96448 g34799 i0 100 86.3245901639344 305 0 100 0 1 305 345 41 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 26329 564 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
12897641 12897641 PRJEB83711_P_NODE_46031_length_275_cov_1.376238_g45765_i0 PRJEB83711 46031 275 1.376238 3.7846545 Adineta vaga 104782 Rotifera other_Eukaryota 387 6.1e-103   NTclustered gi|188501553|gb|EU643478.1| 104782 g45765 i0 92 1 275 22 100 0 1 275 42495 42769 Adineta vaga clone Av_TEL_K_B retrotransposons Juno and Athenas, and mariner-like, complete sequence; hypothetical protein gene, complete cds; transposons piggyBac-like and hobo-like and retrotransposon Athena, complete sequence; kelch domain protein-like protein gene, complete cds; helicase conserved C-terminal domain containing protein-like protein pseudogene, transposons mariner-like, and kelch repeat containing protein-like protein pseudogene, complete sequence; NHL repeat containing cell surface protein-like protein gene, complete cds; transposons piggyBac-like and transposons, complete sequence; TPR repeat containing protein-like protein gene, complete cds; transposon mariner-like, complete sequence; putative S-isoprenylcysteine O-methyltransferase-like protein gene, complete cds; retrotransposon Athena, complete sequence; and unknown genes blastn 275 387 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
21400752 21400752 PRJEB83711_P_NODE_41157_length_286_cov_1.427230_g40891_i0 PRJEB83711 41157 286 1.42723 4.0818778 Eurotatoria 2816136 Rotifera other_Eukaryota 507 4.69e-139   NTclustered gi|2537903784|gb|KM043249.2| 338310 g40891 i0 99.286 87.5174825174825 280 2 98 0 1 280 280 1 Abrochtha meselsoni voucher Angl_1_1 18S ribosomal RNA gene, partial sequence blastn 25030 510 0.994117647058824 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinavida Philodinavidae Abrochtha Abrochtha meselsoni
21820438 21820438 PRJEB83711_P_NODE_28178_length_336_cov_3.064639_g27912_i0 PRJEB83711 28178 336 3.064639 10.29718704 Philodina roseola 96448 Rotifera other_Eukaryota 577 4.229999999999999e-160   NTclustered gi|37785582|gb|AY210469.1| 96448 g27912 i0 97.619 100.85119047619 336 8 100 0 1 336 524 859 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 33886 577 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;