RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB83711" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB83711 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7797008 7797008 PRJEB83711_P_NODE_68067_length_247_cov_1.793103_g67801_i0 PRJEB83711 68067 247 1.793103 4.42896441 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 71.3 6.16e-8   NTclustered gi|325194231|emb|FR825088.1| 890382 g67801 i0 86.364 0.267206477732794 66 8 27 1 182 247 935 999 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 66 71.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
12897818 12897818 PRJEB83711_P_NODE_53331_length_260_cov_2.304813_g53065_i0 PRJEB83711 53331 260 2.304813 5.9925138 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 379 9.569999999999998e-101   NTclustered gi|325194231|emb|FR825088.1| 890382 g53065 i0 94.4 2.22307692307692 250 8 95 4 1 248 1540 1295 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 578 379 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;