RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB83711" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB83711 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12897696 12897696 PRJEB83711_P_NODE_48331_length_270_cov_1.629442_g48065_i0 PRJEB83711 48331 270 1.629442 4.3994934 Bradybaena similaris 145626 Mollusca Mollusca 58.4 5.32e-4   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g48065 i0 97.059 12.5851851851852 34 1 14 0 128 161 22237689 22237722 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 3398 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
15026757 15026757 PRJEB83711_P_NODE_73732_length_244_cov_2.163743_g73466_i0 PRJEB83711 73732 244 2.163743 5.27953292 Metazoa 33208 Mollusca Mollusca 446 8.639999999999999e-121   NTclustered gi|1928112764|gb|MT947788.1| 6523 g73466 i0 99.59 99.9098360655738 244 1 100 0 1 244 1475 1232 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 24378 446 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
19269965 19269965 PRJEB83711_P_NODE_62996_length_250_cov_0.881356_g62730_i0 PRJEB83711 62996 250 0.881356 2.20339 Mytilus californianus 6549 Mollusca Mollusca 56.5 0.002   NTclustered gi|2334608986|ref|XM_052206883.1| 6549 g62730 i0 94.444 0.144 36 2 14 0 51 86 2645 2610 PREDICTED: Mytilus californianus RING finger protein 11-like (LOC127702581), mRNA blastn 36 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
20544616 20544616 PRJEB83711_P_NODE_23317_length_368_cov_1.566102_g23051_i0 PRJEB83711 23317 368 1.566102 5.76325536 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.035   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g23051 i0 100 0.0760869565217391 28 0 8 0 150 177 8953149 8953122 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;