RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB83711" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB83711 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12898186 12898186 PRJEB83711_P_NODE_69391_length_247_cov_0.896552_g69125_i0 PRJEB83711 69391 247 0.896552 2.21448344 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 396 8.95e-106   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g69125 i0 95.902 0.987854251012146 244 10 99 0 4 247 1948328 1948085 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 244 396 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22
23096537 23096537 PRJEB83711_P_NODE_63059_length_250_cov_0.881356_g62793_i0 PRJEB83711 63059 250 0.881356 2.20339 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 191 4.6e-44   NTclustered gi|2874254091|emb|OY970174.1| 171953 g62793 i0 81.513 1.756 238 39 94 5 15 249 3484586 3484821 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 439 191 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
24370523 24370523 PRJEB83711_P_NODE_73500_length_245_cov_0.906977_g73234_i0 PRJEB83711 73500 245 0.906977 2.22209365 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 135 2.13e-27   NTclustered gi|2874253959|emb|OY970284.1| 2651171 g73234 i0 83.673 0.6 147 20 59 3 76 220 1172507 1172363 MAG: Thermoanaerobaculia bacterium isolate MFD05513.bin.1.42 genome assembly, chromosome: 1 blastn 147 135 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;