RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB83711" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJEB83711 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3970590 3970590 PRJEB83711_P_NODE_60064_length_252_cov_0.871508_g59798_i0 PRJEB83711 60064 252 0.871508 2.19620016 Methanobacterium sp. BRmetb2 2025350 Archaea Archaea 139 1.71e-28   NTclustered gi|1473087786|gb|CP022705.1| 2025350 g59798 i0 78.355 538.813492063492 231 39 98 11 18 242 478214 478439 MAG: Methanobacterium sp. BRmetb2 chromosome, complete genome blastn 135781 139 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BRmetb2
21821439 21821439 PRJEB83711_P_NODE_72138_length_245_cov_1.279070_g71872_i0 PRJEB83711 72138 245 1.27907 3.1337215 Methanobacterium formicicum 2162 Archaea Archaea 442 1.1199999999999994e-119   NTclustered gi|952971377|emb|LN734822.1| 2162 g71872 i0 99.184 5 245 2 100 0 1 245 122266 122022 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1225 442 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;