RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB83101" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB83101 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3968324 3968324 PRJEB83101_P_NODE_50924_length_274_cov_2.522388_g50619_i0 PRJEB83101 50924 274 2.522388 6.91134312 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 198 3.0499999999999998e-46   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g50619 i0 82.051 2.56569343065693 234 40 85 2 41 273 3204414 3204646 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 703 198 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
10345337 10345337 PRJEB83101_P_NODE_58109_length_263_cov_1.305263_g57804_i0 PRJEB83101 58109 263 1.305263 3.43284169 Horticoccus luteus 2862869 Bacteria Bacteria 213 1.04e-50   NTclustered gi|2077391884|gb|CP080507.1| 2862869 g57804 i0 81.369 100.752851711027 263 47 99 2 2 263 2127162 2126901 Horticoccus luteus strain KSB-15 chromosome, complete genome blastn 26498 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus luteus
19268478 19268478 PRJEB83101_P_NODE_82156_length_244_cov_0.912281_g81851_i0 PRJEB83101 82156 244 0.912281 2.22596564 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 58.4 4.73e-4   NTclustered gi|2874254096|emb|OY970179.1| 412056 g81851 i0 90.909 1.02049180327869 44 3 18 1 186 229 670107 670149 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 249 58.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
23094673 23094673 PRJEB83101_P_NODE_68679_length_251_cov_0.876404_g68374_i0 PRJEB83101 68679 251 0.876404 2.19977404 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 353 5.569999999999998e-93   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g68374 i0 92.032 1 251 20 100 0 1 251 2801644 2801394 Luteolibacter sp. SL250 chromosome blastn 251 353 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;