RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB83101" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB83101 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6520891 6520891 PRJEB83101_P_NODE_69926_length_250_cov_1.734463_g69621_i0 PRJEB83101 69926 250 1.734463 4.3361575 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 268 2.07e-67   NTclustered gi|575456455|gb|CP007128.1| 861299 g69621 i0 86 33.592 250 35 100 0 1 250 2695849 2696098 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 8398 268 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
16719681 16719681 PRJEB83101_P_NODE_80854_length_245_cov_0.906977_g80549_i0 PRJEB83101 80854 245 0.906977 2.22209365 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 222 1.59e-53   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g80549 i0 86.634 2.65714285714286 202 25 82 2 44 244 2609947 2610147 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 651 222 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
21819070 21819070 PRJEB83101_P_NODE_57238_length_264_cov_1.633508_g56933_i0 PRJEB83101 57238 264 1.633508 4.31246112 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 193 1.36e-44   NTclustered gi|575456455|gb|CP007128.1| 861299 g56933 i0 87.425 1.51893939393939 167 21 63 0 1 167 2686135 2686301 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 401 193 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;