RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB83101" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJEB83101 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1417173 1417173 PRJEB83101_P_NODE_65502_length_253_cov_0.866667_g65197_i0 PRJEB83101 65502 253 0.866667 2.19266751 Geothrix sp. 1962974 Bacteria Bacteria 71.3 6.34e-8   NTclustered gi|2515262989|gb|CP126625.1| 1962974 g65197 i0 79.798 1.02371541501976 99 19 39 1 77 174 1534019 1533921 MAG: Geothrix sp. isolate L227-G1 chromosome, complete genome blastn 259 71.3 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp.
5245205 5245205 PRJEB83101_P_NODE_65825_length_253_cov_0.866667_g65520_i0 PRJEB83101 65825 253 0.866667 2.19266751 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 217 7.689999999999999e-52   NTclustered gi|2874253862|emb|OY969918.1| 171953 g65520 i0 82.857 0.968379446640316 245 38 96 4 1 243 1518266 1518508 MAG: uncultured Acidobacteriota bacterium isolate MFD04967.bin.c.4 genome assembly, chromosome: 1 blastn 245 217 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
12896499 12896499 PRJEB83101_P_NODE_80851_length_245_cov_0.906977_g80546_i0 PRJEB83101 80851 245 0.906977 2.22209365 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 152 2.12e-32   NTclustered gi|2874254108|emb|OY970193.1| 171953 g80546 i0 79.498 0.975510204081633 239 29 96 12 4 237 4248547 4248324 MAG: uncultured Acidobacteriota bacterium isolate MFD09206.bin.1.42 genome assembly, chromosome: 1 blastn 239 152 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
16719764 16719764 PRJEB83101_P_NODE_83894_length_243_cov_0.917647_g83589_i0 PRJEB83101 83894 243 0.917647 2.22988221 Terriglobus roseus 392734 Bacteria Bacteria 169 2.0799999999999997e-37   NTclustered gi|390410848|gb|CP003379.1| 926566 g83589 i0 84.94 0.683127572016461 166 25 68 0 6 171 864200 864035 Terriglobus roseus DSM 18391, complete genome blastn 166 169 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus
21819619 21819619 PRJEB83101_P_NODE_78698_length_246_cov_0.901734_g78393_i0 PRJEB83101 78698 246 0.901734 2.21826564 uncultured Vicinamibacterales bacterium 3036250 Bacteria Bacteria 255 1.58e-63   NTclustered gi|2546137835|emb|OY282382.1| 3036250 g78393 i0 85.484 82.869918699187 248 32 100 4 1 246 3672925 3672680 MAG: uncultured Vicinamibacterales bacterium isolate e65da963-7c29-4b68-91ce-224fd25ea74c genome assembly, chromosome: 1 blastn 20386 255 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     uncultured Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;