RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB83101" and tax_kingdom = "Shotokuvirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Shotokuvirae · 5 ✖

bioproject 1

  • PRJEB83101 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19268635 19268635 PRJEB83101_P_NODE_87616_length_238_cov_3.496970_g87311_i0 PRJEB83101 87616 238 3.49697 8.3227886 Begomovirus capsicumlahorense 3426709 Viruses Viruses 440 3.899999999999999e-119   NTclustered gi|430736472|gb|JN663864.1| 884610 g87311 i0 100 99.9411764705882 238 0 100 0 1 238 1744 1981 Pepper leaf curl Lahore virus isolate Nagpur segment DNA-A, complete sequence blastn 23786 440 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus capsicumlahorense
20543362 20543362 PRJEB83101_P_NODE_58057_length_263_cov_1.378947_g57752_i0 PRJEB83101 58057 263 1.378947 3.62663061 Gammapapillomavirus 7 1175849 Viruses Viruses 302 2.16e-77   NTclustered gi|225927560|ref|NC_012485.1| 915426 g57752 i0 98.817 1 169 2 100 0 1 169 7178 7346 Human papillomavirus type 109, complete genome blastn 263 302 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 7
20543682 20543682 PRJEB83101_P_NODE_70297_length_250_cov_1.152542_g69992_i0 PRJEB83101 70297 250 1.152542 2.881355 Gammapapillomavirus 3 333929 Viruses Viruses 451 1.91e-122   NTclustered gi|1653972953|gb|MK620836.1| 1851213 g69992 i0 99.2 4 250 2 100 0 1 250 6095 5846 Human papillomavirus type 188 strain HPV188/S31-CNI/CO/2018 E6 gene, partial cds; and E1, E2, L2, and L1 genes, complete cds blastn 1000 451 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 3
21818664 21818664 PRJEB83101_P_NODE_4158_length_1008_cov_9.977540_g3937_i0 PRJEB83101 4158 1008 9.97754 100.5736032 Begomovirus capsicumlahorense 3426709 Viruses Viruses 1722 0   NTclustered gi|430736472|gb|JN663864.1| 884610 g3937 i0 99.787 92.8849206349206 937 2 93 0 72 1008 1099 163 Pepper leaf curl Lahore virus isolate Nagpur segment DNA-A, complete sequence blastn 93628 1722 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus capsicumlahorense
25223643 25223643 PRJEB83101_P_NODE_10800_length_594_cov_3.761996_g10511_i0 PRJEB83101 10800 594 3.761996 22.34625624 Begomovirus 10814 Viruses Viruses 1081 0   NTclustered gi|2289620747|gb|MW795667.1| 172278 g10511 i0 99.495 100.070707070707 594 3 100 0 1 594 1725 1132 Chilli leaf curl virus isolate CHL24, complete genome blastn 59442 1086 0.995395948434622 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus chillicapsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;