RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB83101" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJEB83101 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3969226 3969226 PRJEB83101_P_NODE_84224_length_243_cov_0.917647_g83919_i0 PRJEB83101 84224 243 0.917647 2.22988221 Stichococcus bacillaris 37433 Plants Plants 392 1.14e-104   NTclustered gi|371782093|emb|HE610125.1| 37433 g83919 i0 95.082 16.9259259259259 244 11 100 1 1 243 7265 7022 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 4113 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
3969373 3969373 PRJEB83101_P_NODE_90064_length_229_cov_2.153846_g89759_i0 PRJEB83101 90064 229 2.153846 4.93230734 Chlorella variabilis 554065 Plants Plants 318 1.82e-82   NTclustered gi|552825898|ref|XM_005846851.1| 554065 g89759 i0 91.703 1 229 19 100 0 1 229 2530 2302 Chlorella variabilis hypothetical protein (CHLNCDRAFT_31463) mRNA, complete cds blastn 229 318 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
20543173 20543173 PRJEB83101_P_NODE_50657_length_275_cov_1.361386_g50352_i0 PRJEB83101 50657 275 1.361386 3.7438115 Chlorella variabilis 554065 Plants Plants 387 6.1e-103   NTclustered gi|552846103|ref|XM_005851468.1| 554065 g50352 i0 92 96.2654545454545 275 22 100 0 1 275 1086 1360 Chlorella variabilis hypothetical protein (CHLNCDRAFT_55979) mRNA, complete cds blastn 26473 387 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;