RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB82358" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJEB82358 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12476352 12476352 PRJEB82358_P_NODE_12870_length_281_cov_1.774038_g12859_i0 PRJEB82358 12870 281 1.774038 4.98504678 Frigoriglobus 2774146 Bacteria Bacteria 268 2.3599999999999997e-67   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g12859 i0 92.513 5.83985765124555 187 14 67 0 95 281 7910603 7910789 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 1641 268 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
15443301 15443301 PRJEB82358_P_NODE_17113_length_249_cov_0.875000_g17102_i0 PRJEB82358 17113 249 0.875 2.17875 Aquisphaera giovannonii 406548 Bacteria Bacteria 246 9.629999999999999e-61   NTclustered gi|1730068067|gb|CP042997.1| 406548 g17102 i0 88.406 3.06827309236948 207 20 82 2 1 205 274530 274734 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 764 246 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;