RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB81463" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB81463 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3966494 3966494 PRJEB81463_P_NODE_16104_length_271_cov_2.161616_g15832_i0 PRJEB81463 16104 271 2.161616 5.85797936 Platyamoeba placida 3454475 Discosea other_Eukaryota 372 1.68e-98   NTclustered gi|33946348|gb|AY294153.1| 197527 g15832 i0 91.76 98.1254612546125 267 22 99 0 4 270 569 835 Platyamoeba placida actin mRNA, partial cds blastn 26592 372 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
6518520 6518520 PRJEB81463_P_NODE_12026_length_294_cov_1.131222_g11754_i0 PRJEB81463 12026 294 1.131222 3.32579268 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 121 7.37e-23   NTclustered gi|470526273|ref|XM_004356675.1| 1257118 g11754 i0 85.965 2.65986394557823 114 14 38 2 182 294 450 338 Acanthamoeba castellanii str. Neff ribosomal protein L19e, putative (ACA1_174910), partial mRNA blastn 782 121 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7792967 7792967 PRJEB81463_P_NODE_7607_length_364_cov_1.189003_g7335_i0 PRJEB81463 7607 364 1.189003 4.32797092 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 477 4.809999999999998e-130   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g7335 i0 93.293 36.3241758241758 328 14 89 6 41 364 4 327 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 13222 477 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
17992156 17992156 PRJEB81463_P_NODE_30635_length_205_cov_5.492424_g30363_i0 PRJEB81463 30635 205 5.492424 11.2594692 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 265 2.11e-66   NTclustered gi|470421212|ref|XM_004337322.1| 1257118 g30363 i0 90.5 98.1512195121951 200 19 98 0 5 204 31 230 Acanthamoeba castellanii str. Neff actin, putative (ACA1_328920), partial mRNA blastn 20121 265 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21817164 21817164 PRJEB81463_P_NODE_1798_length_750_cov_12.651403_g1555_i0 PRJEB81463 1798 750 12.651403 94.8855225 Platyamoeba placida 3454475 Discosea other_Eukaryota 913 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g1555 i0 88.829 98.6 743 83 99 0 2 744 89 831 Platyamoeba placida actin mRNA, partial cds blastn 73950 913 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
21817459 21817459 PRJEB81463_P_NODE_8018_length_355_cov_0.801418_g7746_i0 PRJEB81463 8018 355 0.801418 2.8450339 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 394 4.84e-105   NTclustered gi|659103923|gb|KJ569725.1| 1512276 g7746 i0 86.981 31.7408450704225 361 33 99 12 1 351 596 952 Cochliopodium kieliense clone 9601 18S ribosomal RNA gene, partial sequence blastn 11268 394 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;