RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB81463" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB81463 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
140692 140692 PRJEB81463_P_NODE_7881_length_358_cov_1.368421_g7609_i0 PRJEB81463 7881 358 1.368421 4.89894718 Fimicolochytrium jonesii 1396493 Fungi Fungi 231 4.06e-56   NTclustered gi|2432060763|ref|XM_053069565.1| 1396493 g7609 i0 81.164 79.8324022346369 292 51 81 2 66 355 537 248 Fimicolochytrium jonesii ribosomal protein L3-domain-containing protein (EV422DRAFT_519007), mRNA blastn 28580 231 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
5243038 5243038 PRJEB81463_P_NODE_19665_length_254_cov_3.701657_g19393_i0 PRJEB81463 19665 254 3.701657 9.40220878 Fimicolochytrium jonesii 1396493 Fungi Fungi 172 1.6999999999999996e-38   NTclustered gi|2432072949|ref|XM_053073468.1| 1396493 g19393 i0 79.283 43.5314960629921 251 48 98 4 5 253 651 403 Fimicolochytrium jonesii ubiquitin-related domain-containing protein (EV422DRAFT_586682), mRNA blastn 11057 172 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
7792522 7792522 PRJEB81463_P_NODE_10027_length_318_cov_3.473469_g9755_i0 PRJEB81463 10027 318 3.473469 11.04563142 Fimicolochytrium jonesii 1396493 Fungi Fungi 99 3.77e-16   NTclustered gi|2432088619|ref|XM_053070871.1| 1396493 g9755 i0 80.469 1.30188679245283 128 25 40 0 168 295 378 251 Fimicolochytrium jonesii ribosomal S13/S15 N-terminal domain-containing protein (EV422DRAFT_536870), mRNA blastn 414 99 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
10343292 10343292 PRJEB81463_P_NODE_12489_length_290_cov_3.170507_g12217_i0 PRJEB81463 12489 290 3.170507 9.1944703 Phlyctochytrium planicorne 261098 Fungi Fungi 213 1.16e-50   NTclustered gi|358030857|dbj|AB609162.1| 261098 g12217 i0 81.679 31.8448275862069 262 43 89 5 31 289 1651 1392 Phlyctochytrium planicorne EF2 gene for translation elongation factor 2, partial cds, isolate: AFTOL-ID 628 blastn 9235 213 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne
21817463 21817463 PRJEB81463_P_NODE_8198_length_351_cov_1.805755_g7926_i0 PRJEB81463 8198 351 1.805755 6.33820005 Fimicolochytrium jonesii 1396493 Fungi Fungi 222 2.39e-53   NTclustered gi|2432072949|ref|XM_053073468.1| 1396493 g7926 i0 84.348 101.532763532764 230 33 65 2 32 260 313 540 Fimicolochytrium jonesii ubiquitin-related domain-containing protein (EV422DRAFT_586682), mRNA blastn 35638 222 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;