RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB81463" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJEB81463 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1415162 1415162 PRJEB81463_P_NODE_27042_length_243_cov_1.835294_g26770_i0 PRJEB81463 27042 243 1.835294 4.45976442 Sulfurospirillum sp. UCH001 1581011 Bacteria Bacteria 243 1.2100000000000004e-59   NTclustered gi|757804895|dbj|AP014723.1| 1581011 g26770 i0 84.711 0.995884773662551 242 37 99 0 1 242 1317577 1317336 Sulfurospirillum sp. UCH001 DNA, complete genome blastn 242 243 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. UCH001
2690627 2690627 PRJEB81463_P_NODE_27123_length_243_cov_1.517647_g26851_i0 PRJEB81463 27123 243 1.517647 3.68788221 Sulfurospirillum sp. 'SP' 3023479 Bacteria Bacteria 411 3.14e-110   NTclustered gi|2591884127|gb|CP118373.1| 3023479 g26851 i0 97.119 2 243 7 100 0 1 243 1212705 1212947 Sulfurospirillum sp. 'SP' chromosome, complete genome blastn 486 411 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. 'SP'
16717255 16717255 PRJEB81463_P_NODE_27514_length_243_cov_0.917647_g27242_i0 PRJEB81463 27514 243 0.917647 2.22988221 Arcobacter roscoffensis 2961520 Bacteria Bacteria 337 5.399999999999998e-88   NTclustered gi|2270258285|gb|CP100595.1| 2961520 g27242 i0 92.083 0.987654320987654 240 17 98 2 5 243 35447 35209 Arcobacter roscoffensis strain ARW1-2F2 chromosome, complete genome blastn 240 337 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter roscoffensis
18849110 18849110 PRJEB81463_P_NODE_27235_length_243_cov_0.917647_g26963_i0 PRJEB81463 27235 243 0.917647 2.22988221 Helicobacter 209 Bacteria Bacteria 449 6.65e-122   NTclustered gi|2165146657|gb|CP089283.1| 210 g26963 i0 100 100 243 0 100 0 1 243 1430785 1430543 Helicobacter pylori strain J99 derivative isolate D1 chromosome, complete genome blastn 24300 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
21399481 21399481 PRJEB81463_P_NODE_28097_length_242_cov_0.923077_g27825_i0 PRJEB81463 28097 242 0.923077 2.23384634 Helicobacter 209 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|2165146657|gb|CP089283.1| 210 g27825 i0 100 193.181818181818 242 0 100 0 1 242 578545 578786 Helicobacter pylori strain J99 derivative isolate D1 chromosome, complete genome blastn 46750 448 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;