RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB81463" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB81463 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6518514 6518514 PRJEB81463_P_NODE_11606_length_298_cov_2.688889_g11334_i0 PRJEB81463 11606 298 2.688889 8.01288922 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 496 1.06e-135   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g11334 i0 96.644 82.1644295302013 298 10 100 0 1 298 1292577 1292280 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 24485 496 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
17575278 17575278 PRJEB81463_P_NODE_22754_length_249_cov_1.329545_g22482_i0 PRJEB81463 22754 249 1.329545 3.31056705 Pseudobdellovibrio 2862745 Bacteria Bacteria 422 1.49e-113   NTclustered gi|507148233|ref|NR_103040.1| 453816 g22482 i0 97.189 209.020080321285 249 7 100 0 1 249 2342 2094 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 52046 422 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
20541630 20541630 PRJEB81463_P_NODE_5697_length_419_cov_2.286127_g5425_i0 PRJEB81463 5697 419 2.286127 9.57887213 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 438 2.6499999999999998e-118   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g5425 i0 85.615 326.326968973747 431 46 100 14 1 419 3447445 3447019 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 136731 438 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
20541642 20541642 PRJEB81463_P_NODE_637_length_1228_cov_2.638095_g492_i0 PRJEB81463 637 1228 2.638095 32.3958066 Peredibacter starrii 28202 Bacteria Bacteria 2019 0   NTclustered gi|2631252187|gb|CP139487.1| 28202 g492 i0 96.341 223.758143322476 1230 42 100 2 1 1228 511138 512366 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 274775 2019 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;