RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB81463" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJEB81463 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
997289 997289 PRJEB81463_P_NODE_11561_length_299_cov_1.283186_g11289_i0 PRJEB81463 11561 299 1.283186 3.83672614 Eukaryota 2759 Plants Plants 211 4.33e-50   NTclustered gi|760449500|ref|XM_011403517.1| 3075 g11289 i0 84.579 68.2040133779264 214 31 71 2 79 291 738 526 Auxenochlorella protothecoides 60S ribosomal protein L8 partial mRNA blastn 20393 213 0.990610328638498 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
6518769 6518769 PRJEB81463_P_NODE_27526_length_243_cov_0.917647_g27254_i0 PRJEB81463 27526 243 0.917647 2.22988221 Lobosphaera incisa 312850 Plants Plants 158 4.51e-34   NTclustered gi|2717096004|gb|PP658226.1| 312850 g27254 i0 78.689 48.559670781893 244 46 99 5 2 243 582 343 Lobosphaera incisa isolate CFRC-1 large subunit ribosomal RNA gene, partial sequence blastn 11800 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
7792607 7792607 PRJEB81463_P_NODE_14687_length_279_cov_1.101942_g14415_i0 PRJEB81463 14687 279 1.101942 3.07441818 Chlamydomonas reinhardtii 3055 Plants Plants 305 1.79e-78   NTclustered gi|2082238339|ref|XM_001701832.2| 3055 g14415 i0 86.38 100.634408602151 279 38 100 0 1 279 910 1188 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g080600v5), mRNA blastn 28077 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10343418 10343418 PRJEB81463_P_NODE_19249_length_256_cov_2.240437_g18977_i0 PRJEB81463 19249 256 2.240437 5.73551872 Dunaliella salina 3046 Plants Plants 156 1.72e-33   NTclustered gi|333691276|gb|JF346104.1| 3046 g18977 i0 79.039 0.89453125 229 46 89 2 29 256 219 446 Dunaliella salina receptor of activated protein kinase C 1 mRNA, complete cds blastn 229 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
11200650 11200650 PRJEB81463_P_NODE_20229_length_253_cov_0.866667_g19957_i0 PRJEB81463 20229 253 0.866667 2.19266751 Eukaryota 2759 Plants Plants 134 7.970000000000001e-27   NTclustered gi|6119991|gb|AF183451.1| 50039 g19957 i0 87.931 45.8498023715415 116 10 45 4 1 115 329 217 Bracteacoccus giganteus strain UTEX 1251 28S ribosomal RNA gene, partial sequence blastn 11600 135 0.992592592592593 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus giganteus
19265996 19265996 PRJEB81463_P_NODE_23376_length_248_cov_1.731429_g23104_i0 PRJEB81463 23376 248 1.731429 4.29394392 Trebouxia sp. SL0000003 3350044 Plants Plants 220 5.81e-53   NTclustered gi|2917930141|emb|OZ234926.1| 3350044 g23104 i0 83.6 1.45161290322581 250 25 100 9 1 248 91855 91620 Trebouxia sp. SL0000003 genome assembly, organelle: mitochondrion blastn 360 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;