RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB81463" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJEB81463 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3966655 3966655 PRJEB81463_P_NODE_26364_length_244_cov_1.637427_g26092_i0 PRJEB81463 26364 244 1.637427 3.99532188 Tepidisphaeraceae bacterium 2876886 Bacteria Bacteria 300 7.12e-77   NTclustered gi|2874253799|emb|OY969783.1| 2876886 g26092 i0 89.113 5.60655737704918 248 18 100 9 1 244 2503059 2502817 MAG: Tepidisphaeraceae bacterium isolate MFD04580.bin.c.1 genome assembly, chromosome: 1 blastn 1368 300 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae   Tepidisphaeraceae bacterium
16717265 16717265 PRJEB81463_P_NODE_27994_length_242_cov_0.923077_g27722_i0 PRJEB81463 27994 242 0.923077 2.23384634 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 110 1.28e-19   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g27722 i0 82.927 7.00413223140496 123 19 50 2 121 242 4322391 4322512 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 1695 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
19265954 19265954 PRJEB81463_P_NODE_20916_length_252_cov_0.871508_g20644_i0 PRJEB81463 20916 252 0.871508 2.19620016 Planctomyces sp. SH-PL62 1636152 Bacteria Bacteria 73.1 1.75e-8   NTclustered gi|1015454008|gb|CP011273.1| 1636152 g20644 i0 92.157 1.06746031746032 51 4 20 0 200 250 4691077 4691027 Planctomyces sp. SH-PL62, complete genome blastn 269 73.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL62
24366225 24366225 PRJEB81463_P_NODE_18100_length_262_cov_1.396825_g17828_i0 PRJEB81463 18100 262 1.396825 3.6596815 Planctomycetes bacterium syqfu 2896527 Bacteria Bacteria 54.7 0.007   NTclustered gi|2155219436|gb|CP087563.1| 2896527 g17828 i0 100 0.110687022900763 29 0 11 0 56 84 1483189 1483217 Planctomycetes bacterium syqfu chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetes bacterium syqfu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;