RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB81327" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 6 ✖

tax_clade 1

bioproject 1

  • PRJEB81327 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4824761 4824761 PRJEB81327_P_NODE_12164_length_388_cov_1.958730_g11556_i0 PRJEB81327 12164 388 1.95873 7.5998724 root 1 Root_unresolved Root_unresolved 717 0   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g11556 i0 100 10.3659793814433 388 0 100 0 1 388 1170 1557 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 4022 717 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.
6100334 6100334 PRJEB81327_P_NODE_61305_length_243_cov_0.905882_g60697_i0 PRJEB81327 61305 243 0.905882 2.20129326 Nitrososphaera 497726 Archaea Archaea 176 1.25e-39   NTclustered gi|647810480|gb|CP007536.1| 926571 g60697 i0 80.488 4.04526748971193 246 34 96 7 2 234 270545 270789 Nitrososphaera viennensis EN76, complete genome blastn 983 176 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera viennensis
7792328 7792328 PRJEB81327_P_NODE_54467_length_247_cov_0.885057_g53859_i0 PRJEB81327 54467 247 0.885057 2.18609079 Haloprofundus halobius 2876194 Archaea Archaea 318 1.9899999999999998e-82   NTclustered gi|2099489105|gb|CP083668.1| 2876194 g53859 i0 89.879 3.21457489878543 247 25 100 0 1 247 101633 101879 Haloprofundus halobius strain SEDH52 plasmid unnamed2, complete sequence blastn 794 318 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloprofundus Haloprofundus halobius
15442040 15442040 PRJEB81327_P_NODE_13113_length_373_cov_1.966667_g12505_i0 PRJEB81327 13113 373 1.966667 7.33566791 Candidatus Micrarchaeota archaeon 2250274 Archaea Archaea 60.2 2.12e-4   NTclustered gi|2156401361|dbj|AP024486.1| 2250274 g12505 i0 92.857 2.75335120643432 42 1 11 2 283 323 398145 398185 Candidatus Micrarchaeota archaeon ARM-1 DNA, complete genome blastn 1027 60.2 1 Archaea   Nanobdellati Candidatus Micrarchaeota         Candidatus Micrarchaeota archaeon
21399338 21399338 PRJEB81327_P_NODE_67377_length_232_cov_2.704403_g66769_i0 PRJEB81327 67377 232 2.704403 6.27421496 root 1 Root_unresolved Root_unresolved 429 8.2e-116   NTclustered gi|373125855|gb|JN567036.1| 29281 g66769 i0 100 102 232 0 100 0 1 232 479 710 Uncultured crenarchaeote clone DDOUBD11 16S ribosomal RNA gene, partial sequence blastn 23664 429 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
21816969 21816969 PRJEB81327_P_NODE_65918_length_239_cov_4.626506_g65310_i0 PRJEB81327 65918 239 4.626506 11.05734934 Haloprofundus sp. MHR1 2572921 Archaea Archaea 52.8 0.021   NTclustered gi|1633225932|gb|CP039833.1| 2572921 g65310 i0 100 0.117154811715481 28 0 12 0 196 223 2006523 2006550 Haloprofundus sp. MHR1 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloprofundus Haloprofundus sp. MHR1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;