RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB81327" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB81327 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6518012 6518012 PRJEB81327_P_NODE_37206_length_266_cov_1.336788_g36598_i0 PRJEB81327 37206 266 1.336788 3.55585608 Lecane bulla 96446 Rotifera other_Eukaryota 279 1.03e-70   NTclustered gi|167842611|gb|EU188928.1| 96446 g36598 i0 86.434 87.4661654135338 258 31 96 4 7 262 15 270 Lecane bulla isolate Cattail D cytochrome oxidase subunit I-like (cox1) gene, partial sequence; mitochondrial blastn 23266 279 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
20540506 20540506 PRJEB81327_P_NODE_14677_length_351_cov_2.517986_g14069_i0 PRJEB81327 14677 351 2.517986 8.83813086 Plationus patulus 360686 Rotifera other_Eukaryota 287 8.35e-73   NTclustered gi|83321197|gb|DQ297812.1| 360686 g14069 i0 85.455 84.4529914529915 275 40 78 0 17 291 275 1 Plationus patulus histone H3 gene, partial cds blastn 29643 287 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Plationus Plationus patulus
23091577 23091577 PRJEB81327_P_NODE_20199_length_309_cov_1.656780_g19591_i0 PRJEB81327 20199 309 1.65678 5.1194502 Polyarthra remata 360693 Rotifera other_Eukaryota 466 8.7e-127   NTclustered gi|83285205|gb|DQ297752.1| 360693 g19591 i0 93.851 79.1909385113269 309 19 100 0 1 309 601 293 Polyarthra remata 28S ribosomal RNA gene, partial sequence blastn 24470 466 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Synchaetidae Polyarthra Polyarthra remata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;