RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB81327" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB81327 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
139635 139635 PRJEB81327_P_NODE_22341_length_295_cov_1.387387_g21733_i0 PRJEB81327 22341 295 1.387387 4.09279165 Heterorhabditis bacteriophora 37862 Nematoda Nematoda 322 1.89e-83   NTclustered gi|1963716463|emb|LR890121.1| 37862 g21733 i0 94.286 36.9254237288136 210 12 71 0 1 210 210 1 Heterorhabditis bacteriophora partial mRNA for Hb-hsp90-5 isoform (Hb-hsp90-5 isoform gene), clone 22 blastn 10893 322 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heterorhabditidae Heterorhabditis Heterorhabditis bacteriophora
6517902 6517902 PRJEB81327_P_NODE_28266_length_281_cov_2.384615_g27658_i0 PRJEB81327 28266 281 2.384615 6.70076815 Sudhausia aristotokia 1357959 Nematoda Nematoda 122 1.9499999999999994e-23   NTclustered gi|675118807|gb|KJ877278.1| 1357959 g27658 i0 79.255 46.017793594306 188 30 65 9 24 206 1604 1421 Sudhausia aristotokia strain RS9011 28S ribosomal RNA gene, partial sequence blastn 12931 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Sudhausia Sudhausia aristotokia
10343008 10343008 PRJEB81327_P_NODE_51609_length_248_cov_1.342857_g51001_i0 PRJEB81327 51609 248 1.342857 3.33028536 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.022   NTclustered gi|1972267378|ref|NM_001268679.3| 6239 g51001 i0 100 0.451612903225806 28 0 11 0 136 163 1924 1897 Caenorhabditis elegans ZZ-type domain-containing protein (sqst-1), partial mRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20541182 20541182 PRJEB81327_P_NODE_68197_length_228_cov_2.561290_g67589_i0 PRJEB81327 68197 228 2.56129 5.8397412 Camacolaimus sp. OVN-2021 2893397 Nematoda Nematoda 339 1.3899999999999998e-88   NTclustered gi|2130729777|gb|OL416397.1| 2893397 g67589 i0 92.982 100.293859649123 228 16 100 0 1 228 2092 1865 Camacolaimus sp. OVN-2021 isolate 2020-8 large subunit ribosomal RNA gene, partial sequence blastn 22867 339 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Leptolaimidae Camacolaimus Camacolaimus sp. OVN-2021

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;