RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB81327" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB81327 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2690022 2690022 PRJEB81327_P_NODE_46043_length_251_cov_1.556180_g45435_i0 PRJEB81327 46043 251 1.55618 3.9060118 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 281 2.66e-71   NTclustered gi|575456455|gb|CP007128.1| 861299 g45435 i0 86.853 1 251 33 100 0 1 251 3210109 3210359 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 251 281 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7792040 7792040 PRJEB81327_P_NODE_32007_length_275_cov_1.217822_g31399_i0 PRJEB81327 32007 275 1.217822 3.3490105 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 298 2.94e-76   NTclustered gi|575456455|gb|CP007128.1| 861299 g31399 i0 86.232 106.301818181818 276 36 100 2 1 275 37290 37016 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 29233 298 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
15442447 15442447 PRJEB81327_P_NODE_43793_length_255_cov_1.082418_g43185_i0 PRJEB81327 43793 255 1.082418 2.7601659 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 311 3.46e-80   NTclustered gi|575456455|gb|CP007128.1| 861299 g43185 i0 88.627 94.9176470588235 255 29 100 0 1 255 4457727 4457981 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 24204 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
17991351 17991351 PRJEB81327_P_NODE_33415_length_272_cov_1.547739_g32807_i0 PRJEB81327 33415 272 1.547739 4.20985008 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 193 1.41e-44   NTclustered gi|575461033|gb|CP007129.1| 861299 g32807 i0 82.096 0.841911764705882 229 38 84 3 1 228 598802 599028 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence blastn 229 193 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
21816684 21816684 PRJEB81327_P_NODE_44738_length_253_cov_1.711111_g44130_i0 PRJEB81327 44738 253 1.711111 4.32911083 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 150 7.91e-32   NTclustered gi|2874253995|emb|OY970320.1| 246130 g44130 i0 84.768 28.5928853754941 151 21 59 2 2 151 1272128 1271979 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 7234 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;