RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB81327" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB81327 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
140097 140097 PRJEB81327_P_NODE_57021_length_245_cov_1.476744_g56413_i0 PRJEB81327 57021 245 1.476744 3.6180228 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 368 1.93e-97   NTclustered gi|300078498|gb|GU001160.1| 5755 g56413 i0 93.927 3.58367346938775 247 10 100 4 1 245 6398 6155 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 878 368 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2689930 2689930 PRJEB81327_P_NODE_38523_length_263_cov_3.178947_g37915_i0 PRJEB81327 38523 263 3.178947 8.36063061 Platyamoeba sp. COHH 7 943227 Discosea other_Eukaryota 399 7.439999999999999e-107   NTclustered gi|319659362|gb|GU320599.1| 943227 g37915 i0 93.962 102.212927756654 265 14 100 2 1 263 391 127 Platyamoeba sp. COHH 7 18S ribosomal RNA gene, partial sequence blastn 26882 399 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. COHH 7
20540509 20540509 PRJEB81327_P_NODE_14817_length_350_cov_1.111913_g14209_i0 PRJEB81327 14817 350 1.111913 3.8916955 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 538 2.0799999999999993e-148   NTclustered gi|300078498|gb|GU001160.1| 5755 g14209 i0 94.382 17.4742857142857 356 10 100 8 1 350 5897 5546 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6116 538 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;