RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB81171" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB81171 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1414088 1414088 PRJEB81171_P_NODE_8122_length_251_cov_0.876404_g7995_i0 PRJEB81171 8122 251 0.876404 2.19977404 Desulfarculia bacterium 3065862 Bacteria Bacteria 183 7.73e-42   NTclustered gi|2621701821|emb|OY759351.1| 3065862 g7995 i0 80.247 58.8207171314741 243 48 97 0 4 246 700264 700506 MAG: Desulfarculia bacterium isolate c1361fd1-6016-418c-9b2d-a8e9625d1ec5 genome assembly, chromosome: 1 blastn 14764 183 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia       Desulfarculia bacterium
17574538 17574538 PRJEB81171_P_NODE_3334_length_361_cov_2.027778_g3207_i0 PRJEB81171 3334 361 2.027778 7.32027858 Geobacter 28231 Bacteria Bacteria 414 3.79e-111   NTclustered gi|747129828|gb|CP009788.1| 345632 g3207 i0 87.363 244.606648199446 364 42 100 4 1 361 2443725 2444087 Geobacter pickeringii strain G13, complete genome blastn 88303 414 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter pickeringii
24365197 24365197 PRJEB81171_P_NODE_5080_length_295_cov_1.229730_g4953_i0 PRJEB81171 5080 295 1.22973 3.6277035 Desulfolithobacter dissulfuricans 2795293 Bacteria Bacteria 270 6.9399999999999985e-68   NTclustered gi|2304357171|dbj|AP024233.1| 2795293 g4953 i0 83.388 225.613559322034 307 36 100 13 1 295 1926704 1927007 Desulfobulbaceae bacterium GF1 GF1 DNA, complete genome blastn 66556 270 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfolithobacter Desulfolithobacter dissulfuricans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;