RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB81171" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB81171 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2689554 2689554 PRJEB81171_P_NODE_9223_length_245_cov_1.494186_g9096_i0 PRJEB81171 9223 245 1.494186 3.6607557 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 82.4 2.82e-11   NTclustered gi|669149879|ref|XM_008612280.1| 1156394 g9096 i0 80.952 1.33061224489796 105 18 42 2 140 243 3144 3041 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 326 82.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
12892808 12892808 PRJEB81171_P_NODE_1331_length_569_cov_3.344758_g1209_i0 PRJEB81171 1331 569 3.344758 19.03167302 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.016   NTclustered gi|170285697|emb|CU672270.3| 123356 g1209 i0 100 0.0509666080843585 29 0 5 0 454 482 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
19264947 19264947 PRJEB81171_P_NODE_5096_length_294_cov_2.171946_g4969_i0 PRJEB81171 5096 294 2.171946 6.38552124 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 87.9 7.48e-13   NTclustered gi|2794921614|ref|XM_067881037.1| 164328 g4969 i0 87.838 1.38775510204082 74 9 25 0 173 246 119 192 Phytophthora ramorum 40S ribosomal protein S2 (KRP23_10570), partial mRNA blastn 408 87.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;