RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB81171" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB81171 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6517653 6517653 PRJEB81171_P_NODE_8026_length_251_cov_1.308989_g7899_i0 PRJEB81171 8026 251 1.308989 3.28556239 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 363 9.249999999999997e-96   NTclustered gi|2874253938|emb|OY970263.1| 412054 g7899 i0 93.117 547.00796812749 247 17 98 0 1 247 801648 801402 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 137299 363 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16716109 16716109 PRJEB81171_P_NODE_3154_length_371_cov_1.902685_g3027_i0 PRJEB81171 3154 371 1.902685 7.05896135 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 422 2.33e-113   NTclustered gi|2874253938|emb|OY970263.1| 412054 g3027 i0 87.332 106.859838274933 371 43 99 3 1 369 803012 802644 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 39645 422 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16716238 16716238 PRJEB81171_P_NODE_954_length_670_cov_2.403685_g835_i0 PRJEB81171 954 670 2.403685 16.1046895 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 917 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g835 i0 91.42 96.3910447761194 676 47 100 8 1 670 1903488 1902818 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 64582 917 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17990996 17990996 PRJEB81171_P_NODE_6715_length_267_cov_3.953608_g6588_i0 PRJEB81171 6715 267 3.953608 10.55613336 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 374 4.589999999999998e-99   NTclustered gi|2874253978|emb|OY970303.1| 412054 g6588 i0 92.72 315.213483146067 261 15 97 4 1 259 5915222 5915480 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 84162 374 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19264966 19264966 PRJEB81171_P_NODE_6116_length_277_cov_1.274510_g5989_i0 PRJEB81171 6116 277 1.27451 3.5303927 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 381 2.86e-101   NTclustered gi|2874253728|emb|OY969570.1| 412054 g5989 i0 92.251 178.15523465704 271 17 97 4 1 269 172320 172052 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 49349 381 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;