RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB81171" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB81171 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3965544 3965544 PRJEB81171_P_NODE_4724_length_306_cov_1.463519_g4597_i0 PRJEB81171 4724 306 1.463519 4.47836814 Paludibaculum fermentans 1473598 Bacteria Bacteria 429 1.13e-115   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g4597 i0 92.881 73.0424836601307 295 21 96 0 12 306 4786133 4785839 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 22351 429 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
11617984 11617984 PRJEB81171_P_NODE_6190_length_276_cov_1.320197_g6063_i0 PRJEB81171 6190 276 1.320197 3.64374372 Paludibaculum fermentans 1473598 Bacteria Bacteria 350 8.04e-92   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g6063 i0 89.781 239.952898550725 274 27 99 1 3 276 4787199 4787471 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 66227 350 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
16716067 16716067 PRJEB81171_P_NODE_10134_length_237_cov_2.109756_g10007_i0 PRJEB81171 10134 237 2.109756 5.00012172 Paludibaculum fermentans 1473598 Bacteria Bacteria 322 1.47e-83   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g10007 i0 91.139 383.46835443038 237 21 100 0 1 237 4784808 4784572 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 90882 322 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans
23091347 23091347 PRJEB81171_P_NODE_3679_length_345_cov_1.143382_g3552_i0 PRJEB81171 3679 345 1.143382 3.9446679 Paludibaculum fermentans 1473598 Bacteria Bacteria 560 4.39e-155   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g3552 i0 95.942 103.776811594203 345 14 100 0 1 345 4786572 4786228 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 35803 560 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;