RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJEB81171" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJEB81171 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
139376 139376 PRJEB81171_P_NODE_4781_length_304_cov_2.870130_g4654_i0 PRJEB81171 4781 304 2.87013 8.7251952 Volvox carteri 3067 Plants Plants 148 3.5099999999999993e-31   NTclustered gi|302843775|ref|XM_002953383.1| 3068 g4654 i0 84.932 36.1052631578947 146 22 48 0 11 156 210 65 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_105955), partial mRNA blastn 10976 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
2271791 2271791 PRJEB81171_P_NODE_5302_length_290_cov_1.686636_g5175_i0 PRJEB81171 5302 290 1.686636 4.8912444 Trebouxia 13786 Plants Plants 531 2.83e-146   NTclustered gi|49781197|gb|AY648107.1| 283661 g5175 i0 99.655 100.555172413793 290 1 100 0 1 290 1790 1501 Trebouxia sp. Wei 22-c 26S ribosomal RNA gene, partial sequence blastn 29161 536 0.990671641791045 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. Wei 22-c
5242016 5242016 PRJEB81171_P_NODE_4985_length_298_cov_1.688889_g4858_i0 PRJEB81171 4985 298 1.688889 5.03288922 Polytomella parva 51329 Plants Plants 195 4.35e-45   NTclustered gi|1861356367|gb|MT377411.1| 51329 g4858 i0 80.62 11.0302013422819 258 44 86 6 1 255 297 551 Polytomella parva clone 0016300147 40S ribosomal protein S2 (RPS2) mRNA, complete cds; plastid blastn 3287 195 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
12892871 12892871 PRJEB81171_P_NODE_3851_length_338_cov_1.052830_g3724_i0 PRJEB81171 3851 338 1.05283 3.5585654 Chloromonas sp. ANT3 55215 Plants Plants 279 1.34e-70   NTclustered gi|2625153|gb|AF032877.1| 55215 g3724 i0 82.282 95.0414201183432 333 49 97 9 1 328 1837 2164 Chloromonas sp. ANT3 alpha-tubulin (tuba1) gene, complete cds blastn 32124 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chloromonas Chloromonas sp. ANT3
19264951 19264951 PRJEB81171_P_NODE_5316_length_290_cov_1.364055_g5189_i0 PRJEB81171 5316 290 1.364055 3.9557595 Stichococcus bacillaris 37433 Plants Plants 300 8.69e-77   NTclustered gi|371782093|emb|HE610125.1| 37433 g5189 i0 96.667 13.3758620689655 180 6 62 0 1 180 7003 7182 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 3879 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
21816218 21816218 PRJEB81171_P_NODE_7998_length_251_cov_1.606742_g7871_i0 PRJEB81171 7998 251 1.606742 4.03292242 uncultured Trebouxia photobiont 285713 Plants Plants 431 2.4999999999999996e-116   NTclustered gi|94448749|emb|AJ969577.1| 285713 g7871 i0 97.61 88.9840637450199 251 6 100 0 1 251 1465 1715 Uncultured Trebouxia photobiont 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), isolate L-265-II blastn 22335 431 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
23091421 23091421 PRJEB81171_P_NODE_7159_length_260_cov_1.941176_g7032_i0 PRJEB81171 7159 260 1.941176 5.0470576 Trebouxia sp. ex Placidium sp. PJ-2019a 2571973 Plants Plants 475 1.1899999999999999e-129   NTclustered gi|1691252205|emb|LR586036.1| 2571973 g7032 i0 99.617 100.3 261 0 100 1 1 260 159 419 Trebouxia sp. ex Placidium sp. PJ-2019a partial 26S rRNA gene, isolate Trebouxia sp. pj16 ex Placidium sp. PJ-2019a blastn 26078 475 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. ex Placidium sp. PJ-2019a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;