RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJEB81171" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJEB81171 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
139326 139326 PRJEB81171_P_NODE_281_length_1185_cov_6.553058_g206_i0 PRJEB81171 281 1185 6.553058 77.6537373 Heterolobosea sp. HGG1 1237086 Heterolobosea other_Eukaryota 1624 0   NTclustered gi|407750695|gb|JX441981.1| 1237086 g206 i0 91.443 44.1113924050633 1192 88 100 13 1 1185 1199 15 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 52272 1624 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1
5242081 5242081 PRJEB81171_P_NODE_7605_length_253_cov_1.588889_g7478_i0 PRJEB81171 7605 253 1.588889 4.01988917 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.023   NTclustered gi|1031970221|gb|CP015655.1| 85057 g7478 i0 100 0.110671936758893 28 0 11 0 218 245 50510 50537 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
6517529 6517529 PRJEB81171_P_NODE_266_length_1218_cov_4.388646_g194_i0 PRJEB81171 266 1218 4.388646 53.45370828 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 274 2.4399999999999993e-68   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g194 i0 77.301 15.5894909688013 489 95 47 11 1 479 3207 2725 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18988 274 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
12892807 12892807 PRJEB81171_P_NODE_1311_length_572_cov_3.396794_g1189_i0 PRJEB81171 1311 572 3.396794 19.42966168 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 353 1.3799999999999997e-92   NTclustered gi|2618963742|gb|OR769034.1| 5762 g1189 i0 78.209 73.4073426573427 592 101 100 20 1 572 4769 5352 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 41989 353 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20123159 20123159 PRJEB81171_P_NODE_1616_length_519_cov_11.026906_g1493_i0 PRJEB81171 1616 519 11.026906 57.22964214 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 813 0   NTclustered gi|407750695|gb|JX441981.1| 1237086 g1493 i0 95.155 41.0867052023121 516 24 99 1 4 519 1722 1208 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 21324 813 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1
20540288 20540288 PRJEB81171_P_NODE_2777_length_396_cov_1.826625_g2650_i0 PRJEB81171 2777 396 1.826625 7.233435 Euglena gracilis 3039 Euglenozoa other_Eukaryota 158 7.81e-34   NTclustered gi|197725559|gb|EU935857.1| 3039 g2650 i0 81.159 32.4368686868687 207 29 51 5 1 202 387 186 Euglena gracilis calmodulin 1 mRNA, partial cds blastn 12845 158 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;