RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB80557" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB80557 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2689231 2689231 PRJEB80557_S_NODE_31343_length_173_cov_1.661290_g30947_i0 PRJEB80557 31343 173 1.66129 2.8740317 uncultured Granulicella sp. 1241325 Bacteria Bacteria 75 3.1e-9   NTclustered gi|2836016418|emb|OZ196148.1| 1241325 g30947 i0 88.525 0.352601156069364 61 7 35 0 69 129 261946 261886 MAG: uncultured Granulicella sp. isolate 9057d4d9-b77b-4c6f-b84b-ea5519435b63 genome assembly, chromosome: 1 blastn 61 75 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella uncultured Granulicella sp.
7791284 7791284 PRJEB80557_S_NODE_12947_length_258_cov_1.478469_g12551_i0 PRJEB80557 12947 258 1.478469 3.81445002 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 132 2.9300000000000003e-26   NTclustered gi|2874253744|emb|OY969603.1| 171953 g12551 i0 82.051 2.39922480620155 156 26 60 2 104 258 913174 913328 MAG: uncultured Acidobacteriota bacterium isolate MFD01476.bin.c.1 genome assembly, chromosome: 1 blastn 619 132 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;