RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB80557" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 4 ✖

bioproject 1

  • PRJEB80557 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3965318 3965318 PRJEB80557_S_NODE_29644_length_178_cov_1.170543_g29248_i0 PRJEB80557 29644 178 1.1705429999999999 2.08356654 Begomovirus solanumdelhiense 3426993 Viruses Viruses 329 6.21e-86   NTclustered gi|1590128859|gb|MH577634.1| 223347 g29248 i0 100 100 178 0 100 0 1 178 1237 1414 Tomato leaf curl New Delhi virus isolate B-MU.16.DA/6.2 segment DNA-B, complete sequence blastn 17800 329 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus solanumdelhiense
5241787 5241787 PRJEB80557_S_NODE_3525_length_438_cov_3.239075_g3129_i0 PRJEB80557 3525 438 3.239075 14.1871485 Begomovirus solanumdelhiense 3426993 Viruses Viruses 809 0   NTclustered gi|2575753381|gb|OQ262954.1| 223347 g3129 i0 100 100 438 0 100 0 1 438 1086 649 Tomato leaf curl New Delhi virus isolate ES Italy-ZU-Le18 segment DNA-A, complete sequence blastn 43800 809 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus solanumdelhiense
17990781 17990781 PRJEB80557_S_NODE_6895_length_337_cov_2.284722_g6499_i0 PRJEB80557 6895 337 2.284722 7.69951314 Begomovirus solanumdelhiense 3426993 Viruses Viruses 586 7.049999999999998e-163   NTclustered gi|1590129086|gb|MH577693.1| 223347 g6499 i0 99.688 94.9554896142433 320 1 95 0 18 337 358 677 Tomato leaf curl New Delhi virus isolate A-MU.16.ZU/30.1 segment DNA-A, complete sequence blastn 32000 586 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus solanumdelhiense
23091024 23091024 PRJEB80557_S_NODE_18359_length_221_cov_1.203488_g17963_i0 PRJEB80557 18359 221 1.203488 2.65970848 Begomovirus solanumdelhiense 3426993 Viruses Viruses 403 4.69e-108   NTclustered gi|1590129510|gb|MH577746.1| 223347 g17963 i0 99.548 100 221 1 100 0 1 221 1375 1155 Tomato leaf curl New Delhi virus isolate A-AL.14.ZU/19.1 segment DNA-A, complete sequence blastn 22100 403 1 Viruses   Shotokuvirae Cressdnaviricota Repensiviricetes Geplafuvirales Geminiviridae Begomovirus Begomovirus solanumdelhiense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;