RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB80557" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJEB80557 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9066497 9066497 PRJEB80557_S_NODE_3628_length_434_cov_3.249351_g3232_i0 PRJEB80557 3628 434 3.249351 14.10218334 Guttulinopsis sp. 2231167 SAR_Eukaryotes SAR_Eukaryotes 667 0   NTclustered gi|1402550487|gb|MH488773.1| 2231167 g3232 i0 95.933 23.1774193548387 418 6 95 8 22 434 684 1095 Guttulinopsis sp. isolate STA small subunit ribosomal RNA gene, partial sequence blastn 10059 667 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Guttulinopsis Guttulinopsis sp.
11617515 11617515 PRJEB80557_S_NODE_12530_length_261_cov_4.344340_g12134_i0 PRJEB80557 12530 261 4.34434 11.3387274 Phalacroma oxytoxoides 447216 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.024   NTclustered gi|2742502725|gb|PP905714.1| 447216 g12134 i0 100 0.21455938697318 28 0 11 0 1 28 1198 1225 Phalacroma oxytoxoides isolate PhaFC3 small subunit ribosomal RNA gene, partial sequence blastn 56 52.8 1 Eukaryota Sar     Dinophyceae Dinophysales Dinophysaceae Phalacroma Phalacroma oxytoxoides
15441530 15441530 PRJEB80557_S_NODE_20333_length_210_cov_31.900621_g19937_i0 PRJEB80557 20333 210 31.900621 66.9913041 Remanella sp. 1 BS-2022 2930476 SAR_Eukaryotes SAR_Eukaryotes 58.4 3.96e-4   NTclustered gi|2261269021|emb|OX095846.1| 2930476 g19937 i0 100 0.69047619047619 31 0 15 0 1 31 12 42 Remanella sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863273, clone N44:18S_rRNA::TRINITY_DN644_c0_g1_i12:99-1693(+) blastn 145 58.4 1 Eukaryota Sar   Ciliophora Karyorelictea Loxodida Loxodidae Remanella Remanella sp. 1 BS-2022
15441542 15441542 PRJEB80557_S_NODE_22253_length_202_cov_1.758170_g21857_i0 PRJEB80557 22253 202 1.75817 3.5515034 Chaetoceros socialis 163503 SAR_Eukaryotes SAR_Eukaryotes 139 1.31e-28   NTclustered gi|2632235315|gb|OR922697.1| 163503 g21857 i0 90.654 54.5594059405941 107 6 52 4 5 110 3911 4014 Chaetoceros socialis strain AGSB0071 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11021 139 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros socialis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;