RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB80557" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB80557 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11617625 11617625 PRJEB80557_S_NODE_23450_length_197_cov_4.054054_g23054_i0 PRJEB80557 23450 197 4.054054 7.98648638 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 270 4.33e-68   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g23054 i0 95.322 31.0812182741117 171 7 86 1 21 190 6787 6617 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6123 270 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
16715885 16715885 PRJEB80557_S_NODE_30494_length_175_cov_2.404762_g30098_i0 PRJEB80557 30494 175 2.404762 4.2083335 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 268 1.34e-67   NTclustered gi|909719694|gb|KT185628.1| 5755 g30098 i0 94.286 2 175 10 100 0 1 175 7589 7415 Acanthamoeba castellanii isolate BCP-EM3VF21-1 mitochondrion, complete genome blastn 350 268 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23090988 23090988 PRJEB80557_S_NODE_15699_length_237_cov_1.367021_g15303_i0 PRJEB80557 15699 237 1.367021 3.23983977 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 246 9.09e-61   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g15303 i0 90.104 6.70464135021097 192 15 81 4 11 201 7032 6844 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1589 246 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;