RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB7799" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7799 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25663584 25663584 PRJEB7799j_S_NODE_410_length_226_cov_3.324607_g405_i0 PRJEB7799 410 226 3.324607 7.51361182 Desulfatiglandales bacterium 3024416 Bacteria Bacteria 73.1 1.54e-8   NTclustered gi|2621702716|emb|OY759599.1| 3024416 g405 i0 91.071 0.743362831858407 56 2 24 3 156 210 6655243 6655190 MAG: Desulfatiglandales bacterium isolate ef928343-fb2c-4ac1-bd77-a4af7a033044 genome assembly, chromosome: 1 blastn 168 73.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfatiglandales     Desulfatiglandales bacterium
25889121 25889121 PRJEB7799m_S_NODE_699_length_221_cov_2.559140_g694_i0 PRJEB7799 699 221 2.55914 5.6556994 Desulfobacterales 213118 Bacteria Bacteria 248 2.33e-61   NTclustered gi|218759244|gb|CP001322.1| 218208 g694 i0 88.67 108.995475113122 203 23 92 0 1 203 4578799 4578597 Desulfatibacillum aliphaticivorans strain AK-01, complete genome blastn 24088 250 0.992 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfatibacillaceae Desulfatibacillum Desulfatibacillum aliphaticivorans
26479289 26479289 PRJEB7799c_S_NODE_38056_length_151_cov_2.456897_g38033_i0 PRJEB7799 38056 151 2.456897 3.70991447 Pseudodesulfovibrio sp. zrk46 2725288 Bacteria Bacteria 67.6 4.4e-7   NTclustered gi|1832582227|gb|CP051216.1| 2725288 g38033 i0 91.667 9.15894039735099 48 4 32 0 4 51 1549082 1549035 Pseudodesulfovibrio sp. zrk46 chromosome, complete genome blastn 1383 67.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio sp. zrk46

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;