RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB7799" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB7799 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25617376 25617376 PRJEB7799p_S_NODE_2145_length_313_cov_2.089928_g2122_i0 PRJEB7799 2145 313 2.089928 6.54147464 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 135 2.8300000000000004e-27   NTclustered gi|470237759|ref|XM_004350786.1| 261658 g2122 i0 90.291 31.1661341853035 103 10 33 0 211 313 1128 1026 Cavenderia fasciculata actin (DFA_11894), partial mRNA blastn 9755 135 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
26025574 26025574 PRJEB7799o_S_NODE_860_length_230_cov_3.579487_g852_i0 PRJEB7799 860 230 3.579487 8.2328201 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 141 4.26e-29   NTclustered gi|300078501|gb|GU001163.1| 857046 g852 i0 80.311 7.57391304347826 193 33 83 5 40 230 2643 2832 Phalansterium sp. EEG-2010/THA 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1742 141 1 Eukaryota Amoebozoa   Evosea Variosea     Phalansterium Phalansterium filosum
26161209 26161209 PRJEB7799e_S_NODE_23357_length_154_cov_2.672269_g23280_i0 PRJEB7799 23357 154 2.672269 4.11529426 Heterostelium 2058189 Evosea other_Eukaryota 73.1 9.7e-9   NTclustered gi|85062630|gb|DQ340388.1| 13642 g23280 i0 93.75 14.5649350649351 48 3 31 0 88 135 12930 12977 Polysphondylium pallidum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence blastn 2243 73.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;