RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB7799" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB7799 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25664671 25664671 PRJEB7799o_S_NODE_778_length_237_cov_7.148515_g770_i0 PRJEB7799 778 237 7.148515 16.94198055 Dendrochytridium crassum 1352835 Fungi Fungi 115 2.67e-21   NTclustered gi|82398285|gb|DQ273785.1| 1352835 g770 i0 80.795 5.9746835443038 151 25 63 4 73 222 1843 1990 Dendrochytridium crassum isolate AFTOL-ID 41 28S ribosomal RNA gene, partial sequence blastn 1416 115 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Dendrochytridium Dendrochytridium crassum
25801041 25801041 PRJEB7799p_S_NODE_18939_length_167_cov_1.878788_g18916_i0 PRJEB7799 18939 167 1.878788 3.13757596 Spizellomyces punctatus DAOM BR117 645134 Fungi Fungi 75 2.99e-9   NTclustered gi|1027029571|ref|XR_001677165.1| 645134 g18916 i0 77.941 2.81437125748503 136 18 81 7 8 142 2854 2730 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11007), partial rRNA blastn 470 75 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
26433528 26433528 PRJEB7799o_S_NODE_2663_length_177_cov_2.126761_g2655_i0 PRJEB7799 2663 177 2.126761 3.76436697 Nowakowskiella 109880 Fungi Fungi 176 8.5e-40   NTclustered gi|1866582654|gb|MT730829.1| 2011712 g2655 i0 84.746 12.728813559322 177 26 100 1 1 177 3683 3858 Cladochytriales sp. isolate JEL0818 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2253 176 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales     Cladochytriales sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;