RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB7799" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB7799 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25528326 25528326 PRJEB7799n_S_NODE_1969_length_303_cov_168.664179_g1932_i0 PRJEB7799 1969 303 168.664179 511.05246237 Helicobacter pylori 210 Bacteria Bacteria 69.4 2.8e-7   NTclustered gi|2222028449|gb|CP094103.1| 210 g1932 i0 95.349 12.5478547854785 43 2 14 0 1 43 1292615 1292573 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 3802 69.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
25935356 25935356 PRJEB7799f_S_NODE_1484_length_219_cov_4.891304_g1468_i0 PRJEB7799 1484 219 4.891304 10.71195576 Campylobacter sp. 19-13652 2840180 Bacteria Bacteria 63.9 8.95e-6   NTclustered gi|2052158881|dbj|AP024713.1| 2840180 g1468 i0 90 0.684931506849315 50 3 22 2 166 213 1151782 1151733 Campylobacter sp. 19-13652 DNA, complete genome blastn 150 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 19-13652
26344686 26344686 PRJEB7799n_S_NODE_1903_length_309_cov_2.697080_g1866_i0 PRJEB7799 1903 309 2.69708 8.3339772 Campylobacter sp. 19-13652 2840180 Bacteria Bacteria 65.8 3.71e-6   NTclustered gi|2052158881|dbj|AP024713.1| 2840180 g1866 i0 82.667 0.728155339805825 75 11 24 2 89 161 1151708 1151782 Campylobacter sp. 19-13652 DNA, complete genome blastn 225 65.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 19-13652

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;