RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB76780 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12892255 12892255 PRJEB76780_P_NODE_4671_length_376_cov_1.029703_g4571_i0 PRJEB76780 4671 376 1.029703 3.87168328 Pseudodesulfovibrio aespoeensis 182210 Bacteria Bacteria 230 1.5399999999999995e-55   NTclustered gi|316941978|gb|CP002431.1| 643562 g4571 i0 78.797 69.5718085106383 349 68 92 3 3 348 2475509 2475854 Pseudodesulfovibrio aespoeensis Aspo-2 chromosome, complete genome blastn 26159 230 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio aespoeensis
16715404 16715404 PRJEB76780_P_NODE_11134_length_250_cov_0.881356_g11034_i0 PRJEB76780 11134 250 0.881356 2.20339 Desulfuromonas sp. DDH964 1823759 Bacteria Bacteria 159 1.3e-34   NTclustered gi|1015516084|gb|CP015080.1| 1823759 g11034 i0 80.583 2.104 206 40 82 0 1 206 1372927 1373132 Desulfuromonas sp. DDH964 chromosome, complete genome blastn 526 159 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. DDH964
19264307 19264307 PRJEB76780_P_NODE_4716_length_374_cov_1.013289_g4616_i0 PRJEB76780 4716 374 1.013289 3.78970086 Desulfolithobacter dissulfuricans 2795293 Bacteria Bacteria 322 2.46e-83   NTclustered gi|2304357171|dbj|AP024233.1| 2795293 g4616 i0 83.242 426.213903743315 364 48 96 10 1 358 1926416 1926772 Desulfobulbaceae bacterium GF1 GF1 DNA, complete genome blastn 159404 322 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfolithobacter Desulfolithobacter dissulfuricans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;