RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB76780 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
138692 138692 PRJEB76780_P_NODE_12921_length_243_cov_1.829412_g12821_i0 PRJEB76780 12921 243 1.829412 4.44547116 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 193 1.24e-44   NTclustered gi|2318758437|ref|XM_051209067.1| 6185 g12821 i0 82.301 2.26748971193416 226 36 92 3 2 225 4323 4100 Schistosoma haematobium uncharacterized protein (MS3_00001600), mRNA blastn 551 193 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
2688811 2688811 PRJEB76780_P_NODE_12123_length_246_cov_1.364162_g12023_i0 PRJEB76780 12123 246 1.364162 3.35583852 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.022   NTclustered gi|690534546|emb|LN085744.1| 99802 g12023 i0 100 0.113821138211382 28 0 11 0 4 31 2453 2426 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0003758 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
23090723 23090723 PRJEB76780_P_NODE_499_length_1118_cov_3.390431_g443_i0 PRJEB76780 499 1118 3.390431 37.90501858 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 614 1.16e-170   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g443 i0 84.959 9.07692307692308 605 91 80 0 361 965 605 1 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 10148 614 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;