RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB76780 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5241347 5241347 PRJEB76780_P_NODE_2645_length_504_cov_3.361949_g2545_i0 PRJEB76780 2645 504 3.361949 16.94422296 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.014   NTclustered gi|170285697|emb|CU672270.3| 123356 g2545 i0 100 0.0575396825396825 29 0 6 0 474 502 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
7791030 7791030 PRJEB76780_P_NODE_3207_length_456_cov_1.817232_g3107_i0 PRJEB76780 3207 456 1.817232 8.28657792 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 263 1.88e-65   NTclustered gi|695437469|ref|XM_009533931.1| 67593 g3107 i0 80.056 16.9978070175439 356 69 78 2 21 375 562 916 Phytophthora sojae hypothetical protein mRNA blastn 7751 263 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;