RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB76780 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6099589 6099589 PRJEB76780_P_NODE_2465_length_522_cov_4.881960_g2365_i0 PRJEB76780 2465 522 4.88196 25.4838312 Pristionchus 54125 Nematoda Nematoda 154 1.36e-32   NTclustered gi|524845312|gb|KC819366.1| 1355913 g2365 i0 80.18 22.2816091954023 222 30 41 11 89 303 49 263 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 11631 154 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
6516939 6516939 PRJEB76780_P_NODE_666_length_998_cov_5.457297_g596_i0 PRJEB76780 666 998 5.457297 54.46382406 Meloidogyne graminicola 189291 Nematoda Nematoda 377 1.4699999999999999e-99   NTclustered gi|1377671584|gb|MF166622.1| 189291 g596 i0 80.903 0.487975951903808 487 85 48 5 348 827 271 756 Meloidogyne graminicola clone Mg4610 hypothetical protein mRNA, complete cds blastn 487 377 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
16715463 16715463 PRJEB76780_P_NODE_3074_length_467_cov_6.741117_g2974_i0 PRJEB76780 3074 467 6.741117 31.48101639 Pristionchus pauli 376545 Nematoda Nematoda 281 5.32e-71   NTclustered gi|150982019|gb|EF634598.1| 376545 g2974 i0 80.939 4.34903640256959 362 63 77 6 63 421 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2031 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;