RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB76780 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9924465 9924465 PRJEB76780_P_NODE_1488_length_679_cov_2.674917_g1392_i0 PRJEB76780 1488 679 2.674917 18.16268643 root 1 Root_unresolved Root_unresolved 65.8 8.7e-6   NTclustered gi|38606345|gb|AY376153.1| 5762 g1392 i0 97.368 2.54639175257732 38 1 6 0 152 189 1011 1048 Naegleria gruberi isolate 7860 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 1729 65.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
11617271 11617271 PRJEB76780_P_NODE_2130_length_568_cov_4.303030_g2030_i0 PRJEB76780 2130 568 4.30303 24.4412104 Heterolobosea sp. HGG1 1237086 Heterolobosea other_Eukaryota 876 0   NTclustered gi|407750695|gb|JX441981.1| 1237086 g2030 i0 94.542 38.5792253521127 568 30 100 1 1 568 1207 1773 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 21913 876 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1
11617294 11617294 PRJEB76780_P_NODE_450_length_1170_cov_5.238833_g397_i0 PRJEB76780 450 1170 5.238833 61.2943461 Heterolobosea sp. HGG1 1237086 Heterolobosea other_Eukaryota 1596 0   NTclustered gi|407750695|gb|JX441981.1| 1237086 g397 i0 91.334 39.1145299145299 1177 88 100 13 1 1170 17 1186 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 45764 1596 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;