RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB76780 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
138757 138757 PRJEB76780_P_NODE_7281_length_299_cov_1.584071_g7181_i0 PRJEB76780 7281 299 1.584071 4.73637229 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.028   NTclustered gi|1031970221|gb|CP015655.1| 85057 g7181 i0 100 0.0936454849498328 28 0 9 0 192 219 50510 50537 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI5, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
9065999 9065999 PRJEB76780_P_NODE_10908_length_251_cov_0.876404_g10808_i0 PRJEB76780 10908 251 0.876404 2.19977404 Leishmania mexicana 5665 Euglenozoa other_Eukaryota 274 4.46e-69   NTclustered gi|401429827|ref|XM_003879347.1| 929439 g10808 i0 86.454 33.1593625498008 251 32 99 2 1 250 385 634 Leishmania mexicana MHOM/GT/2001/U1103 protein kinase A catalytic subunit isoform 1 partial mRNA blastn 8323 274 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania mexicana
11617342 11617342 PRJEB76780_P_NODE_9550_length_263_cov_1.121053_g9450_i0 PRJEB76780 9550 263 1.121053 2.94836939 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 115 3.02e-21   NTclustered gi|1002455235|ref|XM_015800156.1| 157538 g9450 i0 82.313 2.96958174904943 147 12 53 11 124 263 2122 1983 Leptomonas pyrrhocoris putative mitochondrial heat shock 70-related protein 1, mitochondrial precursor mRNA blastn 781 115 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;