RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB76780 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
138718 138718 PRJEB76780_P_NODE_3081_length_467_cov_1.152284_g2981_i0 PRJEB76780 3081 467 1.152284 5.38116628 Polychytrium aggregatum 110093 Fungi Fungi 121 1.23e-22   NTclustered gi|2432155512|ref|XM_053111530.1| 110093 g2981 i0 75.479 4.29550321199143 261 56 55 8 38 294 469 213 Polychytrium aggregatum ras-related protein-like protein ypt1 (BJ171DRAFT_510992), mRNA blastn 2006 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
2688843 2688843 PRJEB76780_P_NODE_3183_length_458_cov_1.215584_g3083_i0 PRJEB76780 3183 458 1.215584 5.56737472 Batrachochytrium dendrobatidis 109871 Fungi Fungi 52.8 0.044   NTclustered gi|2897840458|gb|CP161934.1| 109871 g3083 i0 100 0.183406113537118 28 0 6 0 135 162 166385 166358 Batrachochytrium dendrobatidis strain JEL423 chromosome 12 blastn 84 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
3964949 3964949 PRJEB76780_P_NODE_7304_length_299_cov_1.044248_g7204_i0 PRJEB76780 7304 299 1.044248 3.12230152 Polychytrium aggregatum 110093 Fungi Fungi 259 1.53e-64   NTclustered gi|2432136351|ref|XM_053109929.1| 110093 g7204 i0 84.074 82.1538461538462 270 41 90 2 13 281 988 1256 Polychytrium aggregatum carbamoyl-phosphate synthase L chain, ATP binding domain-containing protein (BJ171DRAFT_493628), mRNA blastn 24564 259 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14167084 14167084 PRJEB76780_P_NODE_1112_length_784_cov_1.308017_g1024_i0 PRJEB76780 1112 784 1.308017 10.25485328 Polychytrium aggregatum 110093 Fungi Fungi 468 6.59e-127   NTclustered gi|2432132579|ref|XM_053106383.1| 110093 g1024 i0 78.484 70.6339285714286 739 141 93 17 46 775 1761 1032 Polychytrium aggregatum heat shock protein 70 family (BJ171DRAFT_212372), mRNA blastn 55377 468 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
22673355 22673355 PRJEB76780_P_NODE_7318_length_298_cov_4.160000_g7218_i0 PRJEB76780 7318 298 4.16 12.3968 Fungi 4751 Fungi Fungi 121 7.489999999999999e-23   NTclustered gi|2432138713|ref|XM_053107478.1| 110093 g7218 i0 84.252 8.92281879194631 127 16 42 3 157 281 148 24 Polychytrium aggregatum large subunit ribosomal protein 29 (BJ171DRAFT_421272), partial mRNA blastn 2659 122 0.991803278688525 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;