RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB76780 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5241354 5241354 PRJEB76780_P_NODE_3785_length_419_cov_1.578035_g3685_i0 PRJEB76780 3785 419 1.578035 6.61196665 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.011   NTclustered gi|921118745|ref|XM_013578538.1| 51315 g3685 i0 94.286 0.217183770883055 35 2 8 0 204 238 535 569 Eimeria necatrix 5'-3' exoribonuclease 2, related partial mRNA blastn 91 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
14167075 14167075 PRJEB76780_P_NODE_10292_length_253_cov_0.866667_g10192_i0 PRJEB76780 10292 253 0.866667 2.19266751 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.37e-4   NTclustered gi|820696962|tpe|LN714494.1| 432359 g10192 i0 90.909 2.22134387351779 44 4 17 0 32 75 1619412 1619369 TPA_asm: Toxoplasma gondii VEG, chromosome chrV, complete genome blastn 562 60.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
21815536 21815536 PRJEB76780_P_NODE_9458_length_264_cov_1.481675_g9358_i0 PRJEB76780 9458 264 1.481675 3.911622 Plasmodium berghei 5821 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|1843423058|dbj|LC541869.1| 5823 g9358 i0 100 0.113636363636364 30 0 11 0 25 54 51179 51150 Plasmodium berghei ANKA chromosome 1 telomere region, partial sequence blastn 30 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
23090680 23090680 PRJEB76780_P_NODE_12839_length_244_cov_0.912281_g12739_i0 PRJEB76780 12839 244 0.912281 2.22596564 Cystoisospora suis 483139 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|2795624578|ref|XM_068066319.1| 483139 g12739 i0 100 0.114754098360656 28 0 11 0 113 140 3076 3103 Cystoisospora suis transmembrane (CSUI_006155), mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;