RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJEB76780 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1413458 1413458 PRJEB76780_P_NODE_9122_length_269_cov_1.193878_g9022_i0 PRJEB76780 9122 269 1.193878 3.21153182 Prototheca bovis 2509265 Plants Plants 337 6.069999999999998e-88   NTclustered gi|1159431146|gb|KX389286.1| 2509265 g9022 i0 89.219 69.003717472119 269 29 100 0 1 269 454 722 Prototheca bovis isolate SAG-2021 alpha tubulin (TUA1) mRNA, complete cds blastn 18562 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca bovis
12475346 12475346 PRJEB76780_P_NODE_11530_length_248_cov_1.685714_g11430_i0 PRJEB76780 11530 248 1.685714 4.18057072 Chlamydomonadales 3042 Plants Plants 435 1.91e-117   NTclustered gi|430007894|gb|JX888471.1| 3055 g11430 i0 98.387 100 248 3 100 1 1 248 857 611 Chlamydomonas reinhardtii strain CC-620 18S ribosomal RNA gene, partial sequence blastn 24800 435 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12475361 12475361 PRJEB76780_P_NODE_6790_length_309_cov_1.652542_g6690_i0 PRJEB76780 6790 309 1.652542 5.10635478 Eukaryota 2759 Plants Plants 54.7 0.008   NTclustered gi|2082237730|ref|XM_043058991.1| 3055 g6690 i0 94.444 0.210355987055016 36 1 11 1 275 309 219 254 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g052650v5), mRNA blastn 65 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
24364625 24364625 PRJEB76780_P_NODE_9160_length_268_cov_1.789744_g9060_i0 PRJEB76780 9160 268 1.789744 4.79651392 Volvox carteri 3067 Plants Plants 143 1.42e-29   NTclustered gi|302843775|ref|XM_002953383.1| 3068 g9060 i0 84.247 42.1007462686567 146 23 54 0 28 173 210 65 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_105955), partial mRNA blastn 11283 143 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;