RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJEB76780 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
138732 138732 PRJEB76780_P_NODE_4421_length_387_cov_1.238854_g4321_i0 PRJEB76780 4421 387 1.238854 4.79436498 Thecamonas trahens 529818 Root_unresolved Root_unresolved 189 2.7e-43   NTclustered gi|923126900|ref|XM_013901463.1| 461836 g4321 i0 79.336 3.87855297157623 271 54 70 2 118 387 994 1263 Thecamonas trahens ATCC 50062 serine/threonine-protein phosphatase 2A regulatory subunit pppA (AMSG_06862), partial mRNA blastn 1501 189 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
1413388 1413388 PRJEB76780_P_NODE_2122_length_569_cov_6.885081_g2022_i0 PRJEB76780 2122 569 6.885081 39.17611089 Thecamonas trahens 529818 Root_unresolved Root_unresolved 207 1.13e-48   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g2022 i0 81.712 9.5817223198594 257 39 44 6 195 447 277 529 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 5452 207 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
11617306 11617306 PRJEB76780_P_NODE_550_length_1080_cov_4.658391_g491_i0 PRJEB76780 550 1080 4.658391 50.3106228 Thecamonas trahens 529818 Root_unresolved Root_unresolved 431 1.2099999999999999e-115   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g491 i0 77.007 15.5962962962963 822 145 74 31 160 959 997 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 16844 431 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;