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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJEB76780" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 18 ✖

bioproject 1

  • PRJEB76780 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1413373 1413373 PRJEB76780_P_NODE_1342_length_715_cov_2.746106_g1249_i0 PRJEB76780 1342 715 2.746106 19.6346579 Rostrostelium ellipticum 361140 Evosea other_Eukaryota 390 1.33e-103   NTclustered gi|117413669|emb|AM168485.1| 361140 g1249 i0 82.251 76.9426573426573 462 73 64 8 260 715 128 586 Rostrostelium ellipticum partial tuba gene for alpha-tubulin, exon 1, isolate AE2 blastn 55014 390 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Rostrostelium Rostrostelium ellipticum
2688906 2688906 PRJEB76780_P_NODE_9063_length_270_cov_1.187817_g8963_i0 PRJEB76780 9063 270 1.187817 3.2071059 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 455 1.6100000000000002e-123   NTclustered gi|421976335|gb|JQ519484.1| 5778 g8963 i0 97.037 86.9296296296296 270 8 100 0 1 270 13 282 Vermamoeba vermiformis clone JGHverm1 beta-tubulin gene, partial cds blastn 23471 455 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3964861 3964861 PRJEB76780_P_NODE_10464_length_253_cov_0.866667_g10364_i0 PRJEB76780 10464 253 0.866667 2.19266751 Acytostelium subglobosum 361139 Evosea other_Eukaryota 137 6.16e-28   NTclustered gi|831776054|ref|XM_012899232.1| 1410327 g10364 i0 84.892 47.1106719367589 139 18 55 3 27 164 1076 1212 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 11919 137 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
4824505 4824505 PRJEB76780_P_NODE_6904_length_307_cov_1.474359_g6804_i0 PRJEB76780 6904 307 1.474359 4.52628213 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 279 1.21e-70   NTclustered gi|15284031|dbj|AB070527.1| 5791 g6804 i0 83.553 184.824104234528 304 44 99 2 1 304 478 775 Physarum polycephalum ub3 mRNA for ubiquitin 3, complete cds blastn 56741 279 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
5241304 5241304 PRJEB76780_P_NODE_1045_length_809_cov_1.694293_g959_i0 PRJEB76780 1045 809 1.694293 13.70683037 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 209 4.56e-49   NTclustered gi|470508804|ref|XM_004349582.1| 1257118 g959 i0 80.565 6.6946847960445 283 46 35 6 268 547 1009 733 Acanthamoeba castellanii str. Neff calreticulin, putative (ACA1_142350), partial mRNA blastn 5416 209 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6516902 6516902 PRJEB76780_P_NODE_13566_length_232_cov_2.113208_g13466_i0 PRJEB76780 13566 232 2.113208 4.90264256 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 80.5 9.52e-11   NTclustered gi|470460327|ref|XM_004341401.1| 1257118 g13466 i0 78.295 0.685344827586207 129 24 55 4 7 133 682 556 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_265890), partial mRNA blastn 159 80.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9066037 9066037 PRJEB76780_P_NODE_308_length_1362_cov_1.755625_g263_i0 PRJEB76780 308 1362 1.755625 23.9116125 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 881 0   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g263 i0 80.05 49.8237885462555 1208 225 88 14 34 1233 1257 58 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 67860 881 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10341790 10341790 PRJEB76780_P_NODE_1749_length_628_cov_1.796396_g1652_i0 PRJEB76780 1749 628 1.796396 11.28136688 Acytostelium subglobosum 361139 Evosea other_Eukaryota 231 7.459999999999998e-56   NTclustered gi|831786008|ref|XM_012902515.1| 1410327 g1652 i0 79.573 1.53980891719745 328 63 52 4 297 622 412 737 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 967 231 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
10341868 10341868 PRJEB76780_P_NODE_9169_length_268_cov_1.594872_g9069_i0 PRJEB76780 9169 268 1.594872 4.27425696 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 169 2.34e-37   NTclustered gi|470386661|ref|XM_004334172.1| 1257118 g9069 i0 87.162 4.63805970149254 148 19 55 0 5 152 1101 1248 Acanthamoeba castellanii str. Neff methionine aminopeptidase, type II, putative (ACA1_033550), partial mRNA blastn 1243 169 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12892239 12892239 PRJEB76780_P_NODE_2271_length_548_cov_6.151579_g2171_i0 PRJEB76780 2271 548 6.151579 33.71065292 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 255 3.8300000000000003e-63   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g2171 i0 81.329 56.6660583941606 316 58 57 1 107 421 422 107 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 31053 255 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12892241 12892241 PRJEB76780_P_NODE_2611_length_507_cov_57.797235_g2511_i0 PRJEB76780 2611 507 57.797235 293.03198145 Ripella tribonemae 2047823 Discosea other_Eukaryota 789 0   NTclustered gi|1269228445|gb|MF683570.1| 2047823 g2511 i0 94.872 101.128205128205 507 22 99 3 2 507 1640 1137 Ripella tribonemae clone 70.1.5 18S ribosomal RNA gene, partial sequence blastn 51272 789 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
15024322 15024322 PRJEB76780_P_NODE_832_length_906_cov_3.177671_g754_i0 PRJEB76780 832 906 3.177671 28.78969926 Acanthamoeba 5754 Discosea other_Eukaryota 505 5.84e-138   NTclustered gi|881634|gb|U29610.1|ACU29610 5755 g754 i0 82.155 19.5805739514349 594 101 65 3 33 625 813 224 Acanthaoeba castellanii actin-related protein 3 Arp3 mRNA, complete cds blastn 17740 505 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15441205 15441205 PRJEB76780_P_NODE_1433_length_691_cov_6.349515_g1339_i0 PRJEB76780 1433 691 6.349515 43.87514865 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 379 2.79e-100   NTclustered gi|470441552|ref|XM_004339378.1| 1257118 g1339 i0 78.176 71.0622286541245 614 120 88 13 27 633 1 607 Acanthamoeba castellanii str. Neff ribosomal protein L10, putative (ACA1_061530), partial mRNA blastn 49104 379 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15441208 15441208 PRJEB76780_P_NODE_1613_length_652_cov_2.392055_g1516_i0 PRJEB76780 1613 652 2.392055 15.5961986 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 315 7.49e-81   NTclustered gi|470414650|ref|XM_004336660.1| 1257118 g1516 i0 77.528 15.8757668711656 534 112 81 7 13 542 584 55 Acanthamoeba castellanii str. Neff carbamoylphosphate synthase L chain, ATP-binding, putative (ACA1_022330), partial mRNA blastn 10351 315 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16715453 16715453 PRJEB76780_P_NODE_2414_length_530_cov_1.706783_g2314_i0 PRJEB76780 2414 530 1.706783 9.0459499 Acytostelium subglobosum 361139 Evosea other_Eukaryota 294 7.83e-75   NTclustered gi|831769224|ref|XM_012897186.1| 1410327 g2314 i0 78.448 58.4716981132075 464 91 86 8 70 527 19 479 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 30990 294 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
16715484 16715484 PRJEB76780_P_NODE_4794_length_371_cov_1.087248_g4694_i0 PRJEB76780 4794 371 1.087248 4.03369008 Acytostelium subglobosum 361139 Evosea other_Eukaryota 171 9.33e-38   NTclustered gi|831765193|ref|XM_012895955.1| 1410327 g4694 i0 76.22 1.84366576819407 328 75 88 1 7 331 1159 1486 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 684 171 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
19264284 19264284 PRJEB76780_P_NODE_1696_length_635_cov_3.151246_g1599_i0 PRJEB76780 1696 635 3.151246 20.0104121 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.005   NTclustered gi|470378920|ref|XM_004333477.1| 1257118 g1599 i0 94.444 0.0566929133858268 36 2 6 0 84 119 78 43 Acanthamoeba castellanii str. Neff Actobindin, putative (ACA1_256510), partial mRNA blastn 36 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22673353 22673353 PRJEB76780_P_NODE_5218_length_354_cov_2.839858_g5118_i0 PRJEB76780 5218 354 2.839858 10.05309732 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 1.16e-26   NTclustered gi|300078496|gb|GU001158.1| 5778 g5118 i0 89.623 25.8672316384181 106 10 30 1 246 351 987 883 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9157 135 0.992592592592593 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;